BAC Information

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BAC

Clone NameB6Ng01-349C05
Chromosome5 (Build37)
Map Location 147,078,512 - 147,235,076
singlet/doubletdoublet
Overlap geneCdk8, Wasf3
Upstream geneEG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6
Downstream geneLOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349C05.bB6Ng01-349C05.g
ACCGA130213GA130214
length1,208333
definitionB6Ng01-349C05.b B6Ng01-349C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,233,872 - 147,235,076)(147,078,512 - 147,078,844)
sequence
gaattccattcccactgccttgtgctcacaggatctccagcccacagtgg
ctgcccctgcctcgttcctaacactgactctgttactaacggttccagta
ttagggcttttgcagacatctttagcaagtttgaaaggacttttggattc
ctgtttctgaaagtgttccttacattcctgtttttctgagactctatcac
tggatgaaataatgagcagcgctagatgcatcctagataaatgaccccag
gagttcagaacactgtgtggcctattctgttagtactgcagatcacgctg
atctctaagcaccacccagctcctgggcttctaaagtacgtggtgcttag
ctccacatgtttcccttctgcaccaatgaaatcaagtgcaggggatgacg
gttaccaggaggcctcagggtctgactgactcggtacacagccagaatgt
ttccttccatcgctggggaggtttgcaatcagcagacgatcctttgattt
atttagatacaggatggatggtctgctagctgggactgcctgacaaggag
tgggcacagaagaagtggaagaaaaattcctgcagcatgcccaacctttt
gacactgtgacacaacactgtcacatacaaaagtaatgcttgagtgtagt
ctcccctcccccagcctgaaacctgcttgctcaggggtggagcttcccgc
tcaatcggtctgccatgcccactgctggaacctgtcgctttgctgtttgg
agccgtgcacgtggtcaccctgctattggaccccaagactaattggtggg
aatcgggccccttcccctgcttcataactgcgtgcagaacagtaaaatgg
agctttgatcagaatacctgtcttagttgcatttctttatctcaccacct
agcccctcttctcttccaggtttccaaatgcctttccaggctagaaccca
ggttgtgatctgctggccggacacaacacttgagaaccatgtagtttcat
tataggggtgggggcagtactgaatctctgcagttaagagcactggctgc
tcttgcaggatctgagttcaattcccagcaccccacatgacagcctcaca
acaattggccaggaagaatctgacgccctcttcttgacctctatagtatt
tcatattgccaatgcgagccaacactcaacaccattaaaataaagctatt
ttgaaaaa
tcttacctataaaaaaggaaaaaaccaaaaccaaaaccccactacatgct
gcaacgtgagtggaccttgaagatagtactgagtgagcgagccagacata
aaaggataactgtgaggctgggtagataaagagctttcaaggtcccgttt
gatccctagaacctacaaaaaagctaggcatggttggacatgctgatgct
tataatcccagtacagaggaggtaggagtggtgattcctggggctcaaca
gccagcctggcctatgtggtaaattccaggccaatgagagatcctgtctc
aggaacggagagagggagggaggggaggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_147233872_147235076
seq2: B6Ng01-349C05.b_49_1256 (reverse)

seq1  TTTTTAAAAATAAGATTTTATTTTA--TGTGTATGAGTGTTGGCCTGCAT  48
      ||||| ||||||    |||||||||   |||| |||||||||||  ||||
seq2  TTTTTCAAAATA--GCTTTATTTTAATGGTGT-TGAGTGTTGGCTCGCAT  47

seq1  TGTGCATATG-AATACTAT-GAGGTC-AGAAGAGGGCGTCAGAT--CTCC  93
      ||   ||||| |||||||| |||||| |||||||||||||||||   |||
seq2  TGGCAATATGAAATACTATAGAGGTCAAGAAGAGGGCGTCAGATTCTTCC  97

seq1  TGGCCAATGGTTGTGA-GCTGTCATGT-GGGTGCTGGGAATTGAACTCAG  141
      |||||||| ||||||| |||||||||| ||||||||||||||||||||||
seq2  TGGCCAATTGTTGTGAGGCTGTCATGTGGGGTGCTGGGAATTGAACTCAG  147

seq1  ATCCCCTGCAAGAGCAGCCAGTGCTCTTAACTGCAGAGATTCAGTACTGC  191
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT--CCTGCAAGAGCAGCCAGTGCTCTTAACTGCAGAGATTCAGTACTGC  195

seq1  CCCCACCCCTATAATGAAACTACATGGTTCTCAAGTGTTGTGTCCGGCCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCTATAATGAAACTACATGGTTCTCAAGTGTTGTGTCCGGCCA  245

seq1  GCAGATCACAACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGA  291
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAGATCACAACCTGGGTTCTAGCCTGGAAAGGCA-TTTGGAAACCTGGA  294

seq1  AGAGAAGAGGGGCTAGGTGGTGAGATAAAGAAATGCAACTAAGACAGGTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGGGCTAGGTGGTGAGATAAAGAAATGCAACTAAGACAGGTA  344

seq1  TTCTGATCAAAGCTCCATTTTACTGTTCTGCACGCAGTTATGAAGCAGGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCAAAGCTCCATTTTACTGTTCTGCACGCAGTTATGAAGCAGGG  394

seq1  GAAGGGGCCCGATTCCCACCAATTAGTCTTGGGGTCCAATAGCAGGGTGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCCCGATTCCCACCAATTAGTCTTGGGGTCCAATAGCAGGGTGA  444

seq1  CCACGTGCACGGCTCCAAACAGCAAAGCGACAGGTTCCAGCAGTGGGCAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGCACGGCTCCAAACAGCAAAGCGACAGGTTCCAGCAGTGGGCAT  494

seq1  GGCAGACCGATTGAGCGGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACCGATTGAGCGGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGG  544

seq1  CTGGGGGAGGGGAGACTACACTCAAGCATTACTTTTGTATGTGACAGTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAGGGGAGACTACACTCAAGCATTACTTTTGTATGTGACAGTGT  594

seq1  TGTGTCACAGTGTCAAAAGGTTGGGCATGCTGCAGGAATTTTTCTTCCAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACAGTGTCAAAAGGTTGGGCATGCTGCAGGAATTTTTCTTCCAC  644

seq1  TTCTTCTGTGCCCACTCCTTGTCAGGCAGTCCCAGCTAGCAGACCATCCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTGCCCACTCCTTGTCAGGCAGTCCCAGCTAGCAGACCATCCA  694

seq1  TCCTGTATCTAAATAAATCAAAGGATCGTCTGCTGATTGCAAACCTCCCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATCTAAATAAATCAAAGGATCGTCTGCTGATTGCAAACCTCCCC  744

seq1  AGCGATGGAAGGAAACATTCTGGCTGTGTACCGAGTCAGTCAGACCCTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATGGAAGGAAACATTCTGGCTGTGTACCGAGTCAGTCAGACCCTGA  794

seq1  GGCCTCCTGGTAACCGTCATCCCCTGCACTTGATTTCATTGGTGCAGAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTGGTAACCGTCATCCCCTGCACTTGATTTCATTGGTGCAGAAG  844

seq1  GGAAACATGTGGAGCTAAGCACCACGTACTTTAGAAGCCCAGGAGCTGGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATGTGGAGCTAAGCACCACGTACTTTAGAAGCCCAGGAGCTGGG  894

seq1  TGGTGCTTAGAGATCAGCGTGATCTGCAGTACTAACAGAATAGGCCACAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTAGAGATCAGCGTGATCTGCAGTACTAACAGAATAGGCCACAC  944

seq1  AGTGTTCTGAACTCCTGGGGTCATTTATCTAGGATGCATCTAGCGCTGCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGAACTCCTGGGGTCATTTATCTAGGATGCATCTAGCGCTGCT  994

seq1  CATTATTTCATCCAGTGATAGAGTCTCAGAAAAACAGGAATGTAAGGAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTCATCCAGTGATAGAGTCTCAGAAAAACAGGAATGTAAGGAAC  1044

seq1  ACTTTCAGAAACAGGAATCCAAAAGTCCTTTCAAACTTGCTAAAGATGTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGAAACAGGAATCCAAAAGTCCTTTCAAACTTGCTAAAGATGTC  1094

seq1  TGCAAAAGCCCTAATACTGGAACCGTTAGTAACAGAGTCAGTGTTAGGAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGCCCTAATACTGGAACCGTTAGTAACAGAGTCAGTGTTAGGAA  1144

seq1  CGAGGCAGGGGCAGCCACTGTGGGCTGGAGATCCTGTGAGCACAAGGCAG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCAGGGGCAGCCACTGTGGGCTGGAGATCCTGTGAGCACAAGGCAG  1194

seq1  TGGGAATGGAATTC  1205
      ||||||||||||||
seq2  TGGGAATGGAATTC  1208

seq1: chr5_147078512_147078844
seq2: B6Ng01-349C05.g_73_405

seq1  TCTTACCTATAAAAAAGGAAAAAACCAAAACCAAAACCCCACTACATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTATAAAAAAGGAAAAAACCAAAACCAAAACCCCACTACATGCT  50

seq1  GCAACGTGAGTGGACCTTGAAGATAGTACTGAGTGAGCGAGCCAGACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGTGAGTGGACCTTGAAGATAGTACTGAGTGAGCGAGCCAGACATA  100

seq1  AAAGGATAACTGTGAGGCTGGGTAGATAAAGAGCTTTCAAGGTCCCGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATAACTGTGAGGCTGGGTAGATAAAGAGCTTTCAAGGTCCCGTTT  150

seq1  GATCCCTAGAACCTACAAAAAAGCTAGGCATGGTTGGACATGCTGATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTAGAACCTACAAAAAAGCTAGGCATGGTTGGACATGCTGATGCT  200

seq1  TATAATCCCAGTACAGAGGAGGTAGGAGTGGTGATTCCTGGGGCTCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCCAGTACAGAGGAGGTAGGAGTGGTGATTCCTGGGGCTCAACA  250

seq1  GCCAGCCTGGCCTATGTGGTAAATTCCAGGCCAATGAGAGATCCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGCCTATGTGGTAAATTCCAGGCCAATGAGAGATCCTGTCTC  300

seq1  AGGAACGGAGAGAGGGAGGGAGGGGAGGAGAGG  333
      |||||||||||||||||||||||||||||||||
seq2  AGGAACGGAGAGAGGGAGGGAGGGGAGGAGAGG  333