BAC Information

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BAC

Clone NameB6Ng01-349D05
Chromosome5 (Build37)
Map Location 98,483,651 - 98,611,465
singlet/doubletdoublet
Overlap geneEG435856, LOC666315, LOC666320, LOC666326, Prdm8
Upstream geneBmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2
Downstream geneFgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349D05.bB6Ng01-349D05.g
ACCGA130261GA130262
length1,2181,136
definitionB6Ng01-349D05.b B6Ng01-349D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,610,233 - 98,611,465)(98,483,651 - 98,484,788)
sequence
gaattctcacttcccttgataccaccctgtttgggctagaaggggtcagc
cctgcttgaatggtcctgagtgggccctccagctgtttaatccgcagcaa
tttagaagtaatgccccagtggcgggctctctattaagccgtcttacagg
gatcgtttccttcctcagccactggacaccccctgtaatacttagcactt
aaagaaagcaatcatttaaattatttaaactaggtcttagttagccatgc
catttttcttggggaaatctaacaattcctctaagttggtttttccctag
cagtttcaccagtgacagtgattgtctctgtatttatataccttaagtgg
ccgtggggaaaaccgatcttactcttttcttgttcagctagcttctcatt
aaagaaaaatataggcgatgtgtattttgtttaaatcaacatccactagc
caattgccatacaaatgtaagaaaatgcaatgcctgtaactttggctagc
ccctttcctattcgttctcccatatgccccaaatggcaagtatattttcc
agacagtgggaataagaaaaatagccacaacatagaaagtttatgatact
actttctgtttctgcactcgtcctgtccccttctgatttccaattgcaag
tcaaatacgttgcagaatacaggttctctcagctccctttcagtataaac
cctctttctcttcccagttgcctacatttcaacggtttgtaccttgattt
ctgcctcgcgtttgaaagtattcttcacagaagctttttattgtgacagg
agatcgccctccactttggcaacagcagggactcagtcattaaaatgcag
ttctatctaacaatacagcgaaaaggtcccacagccgggctaatagcggt
ccatgctgcctcggtggccgccttgacgcaaatcagccacaatagcgata
ggcaggaccccgggctttatagtatctagcctttcacagtcctacgccca
tccctaggcccgggttctcttccttcgcagatcctcctgggaaactcaga
gccagctgggctcgctgaaagccggtcgctactgcgatgctctccctcca
actcgggctggcattgtctgcagccgcgagctccccaggtcctagcttct
cagaaagtgctctacccggctccctccctggatatctaatgcaggaacac
gtccggtcgtttccctcc
gaattcccaacagccatccatctggaaggccttgccagtatgtaaccaaa
ctcaagccacatggcctaactgaaagagaaaatatatttaattttagaat
ttggttttaaaaaattagaactgagtataaacagagggaaatatgctatt
gggccacaacgtgtctcatggaaacaaaactgtaagggctcctatctgga
aagaacaggtctcaagttcaaatctccaggaaatagactccaccatgctg
aactgcttaggccagagggtcatccttgattccatcttaagttccaagga
atgcccaggaatccaaactctcacagacagggccctagtccaagtaatgg
aaagagaactctagaaatgaggaacttgggcaagaccttcctttctgatt
gagaatcattggggcaagagcaaggttcacactcagaaagttctgctttc
tgtttatggtcaagctctttgggccacctccgttctacagatgataaaaa
tgtagattgtttgtacttgttatgtcccttctcctctctccaaaaggatt
ttcattctcattaagcttaattagacaaagacaaaaaatgacttttgtaa
ttcataaaaaaaaaatagtcaatattttgattgataatctagcaaactgt
taaggagcaatcactcagtgcaggttcaatcaacaatcttctgtttttga
atttgaccttgcaaaattgcactttaaagtcattcgttaaatattttcct
tctgtggcacaaatacaaaatgcaaaccaaggaagctgagtgcacattaa
ttgcgtgcacataaacatcaatgtgtaaaggacatttgccacataccttt
ccggtggctttaaactccccattcttgtgtttgaattagcgcttgctttt
gttcatacatgatattgtacaagatgactcatgaggcagccgaaacaaat
taagctaagtcgacactcttcatctattccttcacttctctgggaatggt
ttcccaccctgtactgacagtcaaaacagggaacttcacatggctttcaa
attcattcatgttagaatggtacccattcacttccagccactgagtcaaa
cacaccaatcctcccttcccttgaagctgactcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98610233_98611465
seq2: B6Ng01-349D05.b_48_1265 (reverse)

seq1  GGAGGGAAACGACGCGGAATGTTGTTTCCACTGCCAATAAGATTATACAA  50
      ||||||||||||| ||||    ||||    ||||  || ||| ||| |  
seq2  GGAGGGAAACGAC-CGGA--CGTGTT---CCTGC--ATTAGA-TATCC--  39

seq1  AGGGA-GGAG-CGGGTAGGAGCACTTTTCTGGAGAAGCTAGGGACTGGGG  98
      ||||| |||| |||||| |||||| ||||| |||||||||||  ||||||
seq2  AGGGAGGGAGCCGGGTA-GAGCAC-TTTCT-GAGAAGCTAGGACCTGGGG  86

seq1  AGCTCGCGGCTGCCAGACAATGCCAGCCCGGAGTGGAGGGAGAGCATCCG  148
      |||||||||||| |||||||||||||||||   |||||||||||||||  
seq2  AGCTCGCGGCTG-CAGACAATGCCAGCCCGAGTTGGAGGGAGAGCATC--  133

seq1  GCAGTAGCGACCGGCTTTCAGCGAGCCCAGCTGGCTCTGAGTTTCCCAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGCGACCGGCTTTCAGCGAGCCCAGCTGGCTCTGAGTTTCCCAGG  183

seq1  AGGATCTGCGAAGGAAGAGAACCCGGGCCTAGGGATGGGCGTAGGACTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGCGAAGGAAGAGAACCCGGGCCTAGGGATGGGCGTAGGACTGT  233

seq1  GAAAGGCTAGATACTATAAAGCCCGGGGTCCTGCCTATCGCTATTGTGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTAGATACTATAAAGCCCGGGGTCCTGCCTATCGCTATTGTGGC  283

seq1  TGATTTGCGTCAAGGCGGCCACCGAGGCAGCATGGACCGCTATTAGCCCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCGTCAAGGCGGCCACCGAGGCAGCATGGACCGCTATTAGCCCG  333

seq1  GCTGTGGGACCTTTTCGCTGTATTGTTAGATAGAACTGCATTTTAATGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGACCTTTTCGCTGTATTGTTAGATAGAACTGCATTTTAATGAC  383

seq1  TGAGTCCCTGCTGTTGCCAAAGTGGAGGGCGATCTCCTGTCACAATAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTGCTGTTGCCAAAGTGGAGGGCGATCTCCTGTCACAATAAAA  433

seq1  AGCTTCTGTGAAGAATACTTTCAAACGCGAGGCAGAAATCAAGGTACAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGTGAAGAATACTTTCAAACGCGAGGCAGAAATCAAGGTACAAA  483

seq1  CCGTTGAAATGTAGGCAACTGGGAAGAGAAAGAGGGTTTATACTGAAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGAAATGTAGGCAACTGGGAAGAGAAAGAGGGTTTATACTGAAAGG  533

seq1  GAGCTGAGAGAACCTGTATTCTGCAACGTATTTGACTTGCAATTGGAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGAGAACCTGTATTCTGCAACGTATTTGACTTGCAATTGGAAAT  583

seq1  CAGAAGGGGACAGGACGAGTGCAGAAACAGAAAGTAGTATCATAAACTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGGACAGGACGAGTGCAGAAACAGAAAGTAGTATCATAAACTTT  633

seq1  CTATGTTGTGGCTATTTTTCTTATTCCCACTGTCTGGAAAATATACTTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGTGGCTATTTTTCTTATTCCCACTGTCTGGAAAATATACTTGC  683

seq1  CATTTGGGGCATATGGGAGAACGAATAGGAAAGGGGCTAGCCAAAGTTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGGCATATGGGAGAACGAATAGGAAAGGGGCTAGCCAAAGTTAC  733

seq1  AGGCATTGCATTTTCTTACATTTGTATGGCAATTGGCTAGTGGATGTTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGCATTTTCTTACATTTGTATGGCAATTGGCTAGTGGATGTTGA  783

seq1  TTTAAACAAAATACACATCGCCTATATTTTTCTTTAATGAGAAGCTAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAAATACACATCGCCTATATTTTTCTTTAATGAGAAGCTAGCT  833

seq1  GAACAAGAAAAGAGTAAGATCGGTTTTCCCCACGGCCACTTAAGGTATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAAAAGAGTAAGATCGGTTTTCCCCACGGCCACTTAAGGTATAT  883

seq1  AAATACAGAGACAATCACTGTCACTGGTGAAACTGCTAGGGAAAAACCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGAGACAATCACTGTCACTGGTGAAACTGCTAGGGAAAAACCAA  933

seq1  CTTAGAGGAATTGTTAGATTTCCCCAAGAAAAATGGCATGGCTAACTAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGAATTGTTAGATTTCCCCAAGAAAAATGGCATGGCTAACTAAG  983

seq1  ACCTAGTTTAAATAATTTAAATGATTGCTTTCTTTAAGTGCTAAGTATTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTTAAATAATTTAAATGATTGCTTTCTTTAAGTGCTAAGTATTA  1033

seq1  CAGGGGGTGTCCAGTGGCTGAGGAAGGAAACGATCCCTGTAAGACGGCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGTGTCCAGTGGCTGAGGAAGGAAACGATCCCTGTAAGACGGCTT  1083

seq1  AATAGAGAGCCCGCCACTGGGGCATTACTTCTAAATTGCTGCGGATTAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAGCCCGCCACTGGGGCATTACTTCTAAATTGCTGCGGATTAAA  1133

seq1  CAGCTGGAGGGCCCACTCAGGACCATTCAAGCAGGGCTGACCCCTTCTAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAGGGCCCACTCAGGACCATTCAAGCAGGGCTGACCCCTTCTAG  1183

seq1  CCCAAACAGGGTGGTATCAAGGGAAGTGAGAATTC  1233
      |||||||||||||||||||||||||||||||||||
seq2  CCCAAACAGGGTGGTATCAAGGGAAGTGAGAATTC  1218

seq1: chr5_98483651_98484788
seq2: B6Ng01-349D05.g_68_1203

seq1  GAATTCCCAACAGCCATCCATCTGGAAGGCCTTGCCAGTATGTAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACAGCCATCCATCTGGAAGGCCTTGCCAGTATGTAACCAAA  50

seq1  CTCAAGCCACATGGCCTAACTGAAAGAGAAAATATATTTAATTTTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCACATGGCCTAACTGAAAGAGAAAATATATTTAATTTTAGAAT  100

seq1  TTGGTTTTAAAAAATTAGAACTGAGTATAAACAGAGGGAAATATGCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAAAAAATTAGAACTGAGTATAAACAGAGGGAAATATGCTATT  150

seq1  GGGCCACAACGTGTCTCATGGAAACAAAACTGTAAGGGCTCCTATCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACAACGTGTCTCATGGAAACAAAACTGTAAGGGCTCCTATCTGGA  200

seq1  AAGAACAGGTCTCAAGTTCAAATCTCCAGGAAATAGACTCCACCATGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGTCTCAAGTTCAAATCTCCAGGAAATAGACTCCACCATGCTG  250

seq1  AACTGCTTAGGCCAGAGGGTCATCCTTGATTCCATCTTAAGTTCCAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTAGGCCAGAGGGTCATCCTTGATTCCATCTTAAGTTCCAAGGA  300

seq1  ATGCCCAGGAATCCAAACTCTCACAGACAGGGCCCTAGTCCAAGTAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGGAATCCAAACTCTCACAGACAGGGCCCTAGTCCAAGTAATGG  350

seq1  AAAGAGAACTCTAGAAATGAGGAACTTGGGCAAGACCTTCCTTTCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACTCTAGAAATGAGGAACTTGGGCAAGACCTTCCTTTCTGATT  400

seq1  GAGAATCATTGGGGCAAGAGCAAGGTTCACACTCAGAAAGTTCTGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATTGGGGCAAGAGCAAGGTTCACACTCAGAAAGTTCTGCTTTC  450

seq1  TGTTTATGGTCAAGCTCTTTGGGCCACCTCCGTTCTACAGATGATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGGTCAAGCTCTTTGGGCCACCTCCGTTCTACAGATGATAAAAA  500

seq1  TGTAGATTGTTTGTACTTGTTATGTCCCTTCTCCTCTCTCCAAAAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTGTTTGTACTTGTTATGTCCCTTCTCCTCTCTCCAAAAGGATT  550

seq1  TTCATTCTCATTAAGCTTAATTAGACAAAGACAAAAAATGACTTTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTCATTAAGCTTAATTAGACAAAGACAAAAAATGACTTTTGTAA  600

seq1  TTCATAAAAAAAAAATAGTCAATATTTTGATTGATAATCTAGCAAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAAAAAAAATAGTCAATATTTTGATTGATAATCTAGCAAACTGT  650

seq1  TAAGGAGCAATCACTCAGTGCAGGTTCAATCAACAATCTTCTGTTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCAATCACTCAGTGCAGGTTCAATCAACAATCTTCTGTTTTTGA  700

seq1  ATTTGACCTTGCAAAATTGCACTTTAAAGTCATTCGTTAAATATTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACCTTGCAAAATTGCACTTTAAAGTCATTCGTTAAATATTTTCCT  750

seq1  TCTGTGGCACAAATACAAAATGCAAACCAAGGAAGCTGAGTGCACATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCACAAATACAAAATGCAAACCAAGGAAGCTGAGTGCACATTAA  800

seq1  TTGCGTGCACATAAACATCAATGTGTAAAGGACA-TTGCCACATACC-TT  848
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TTGCGTGCACATAAACATCAATGTGTAAAGGACATTTGCCACATACCTTT  850

seq1  CCGGTGGCTTTAAACTCCCCATTCTTGTGTTTGAATTAGCGCTTGCTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGGCTTTAAACTCCCCATTCTTGTGTTTGAATTAGCGCTTGCTTTT  900

seq1  GTTCATACATGATATTGTACAAGATGACTCATGAGGCAGCCGAAACAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATACATGATATTGTACAAGATGACTCATGAGGCAGCCGAAACAAAT  950

seq1  TAAGCTAAGTCGACACTCTTCATCTATTCCTTCACTTCTCTGGGAATGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAGTCGACACTCTTCATCTATTCCTTCACTTCTCTGGGAATGGT  1000

seq1  TTCCCACCCTGTACTGACAGTCAAAACAGGGGAACTTCACATGGCTTTCA  1048
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCCCACCCTGTACTGACAGTCAAAACA-GGGAACTTCACATGGCTTTCA  1049

seq1  AATTCATTCATGTTAG-ATGGTAACACAATTCACTTCCAAGCCACTGAGG  1097
      |||||||||||||||| ||||||   | |||||||||| ||||||||| |
seq2  AATTCATTCATGTTAGAATGGTA--CCCATTCACTTCC-AGCCACTGA-G  1095

seq1  TCAAACACA-CAATCTCCCTTTCCCCTGAAGCTGACTTCAGA  1138
      ||||||||| |||||  || ||||| |||||||||| |||||
seq2  TCAAACACACCAATCCTCCCTTCCCTTGAAGCTGAC-TCAGA  1136