BAC Information

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BAC

Clone NameB6Ng01-349J05
Chromosome11 (Build37)5 (Build37)
Map Location 26,491,490 - 26,492,69442,756,974 - 42,757,277
singlet/doubletsingletsinglet
Overlap geneVrk2
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl
Downstream geneEG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349J05.bB6Ng01-349J05.g
ACCGA130532GA130533
length1,186753
definitionB6Ng01-349J05.b B6Ng01-349J05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,491,490 - 26,492,694)(42,756,974 - 42,757,277)
sequence
gaattctgttatttcagttagctcttaaaataccattgttaccatagtta
caaagatcacagacgtaattagacttggcaatttagtcatactttaccta
agtatatcagtccaaaccctccagagccgatcatcttgcccagtgcccac
cggtttccttccatatcatccagaattttgccttctgggagtggaaccgg
aagcttatatttctcttttcttcttggtgccatcacatctattggcagat
ggatgagataaatagttaaaactctagcattgaaactcatttctcctaat
gtctttcccagaattaagattaggatcctgaagtcaattccaactggata
agccatccacaacattcaagttagaaattcagatactttgaaacctaaga
gatactgacatgtgtatgtatgtatgtatgtatatatatatgtaataata
tatacataatatatgcaatactcttgtagaggatgatctgggttcagttc
ccagtgcccacatggcagcttataactctctgtaactcgagctctggggc
ctgatatatttgacctcttcaactggcacctgtatacacacacacaaaat
taaaaattaaaaataaatttcttaaaaattaaaaatatctactgtgtttc
atttaaatcaatacttcaaaatttcatgtaggagtttattaatatttagc
aacactatagaatgtaattaattatcattgtatagaaattagcaaatgag
taacgcgattaatatataattaataaatattagaaaaaatgcttgaaatt
agatgtgaaagtaaccatggtcttcttagtatttctagactaaaacaaaa
acaaaaacaaataaacaaaaccatggtaaagcaactttggaattacttca
tatagtttacaatccacctgaaaggggagtcagggcaggaactcaaagca
gcaattgcaggcaggtactgaagccaccatggcagacccccctgctcaat
agcttgtcctgcttcgaactggatcaaccagcttggctttcttaacaagc
aagcccaaggtggcactgctgcctgggtcctcccccatctatcacctcaa
cagatccgcatctgccctgagtaaatctatggagtatttgccacttgatt
aaattctgtgctccttctgggaatgtgggtatctgt
gaattcactcactgataggtggatattggcccagaagcttggaataccca
atatacaattcacagaccacatgaagctcaagaagaaggaagaccaaagt
gtggatatttcagtccttcttagaaagggtgggggggggggacaaaatac
catgggaggagttacagagacaaagtgtggagcaaagtctgaaggaaagg
ccatccagagactgtcctacctgggtatccatcccatacacagtcaccaa
acctagatagtcttgtggatgccaacaagtacttgctgacagaagcctga
tatagctttctcctgaaaggctctaccagtacctgacaaatacagaggta
tatgttttcagccaaccattggacttagcacagagtccacagtggaggag
ctaaagaaaggacccaaggagctgaaggggtttacagccccatagccgga
aaaaaaatatgaaccaactagtaccccaccccacccccgagctcccagaa
ccaaaccaaccatggagggactcatggcttcaaccatatatgtagcagtg
gatggccttgtcagtcatcaatgggaggaaaggcccttggtcctatgaag
gctttatgcctcagtgtaggggaattccagggccaagaagcaggagtgag
cagtggaataggagatgggacggggggcttttcagaggggaaaccaggaa
aggggacaatattttgaaatgttaataaagaaaatatctaataaaatgtt
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26491490_26492694
seq2: B6Ng01-349J05.b_48_1233

seq1  GAATTCTGTTATTTCAGTTAGCTCTTAAAATACCATTGTTACCATAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATTTCAGTTAGCTCTTAAAATACCATTGTTACCATAGTTA  50

seq1  CAAAGATCACAGACGTAATTAGACTTGGCAATTTAGTCATACTTTACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATCACAGACGTAATTAGACTTGGCAATTTAGTCATACTTTACCTA  100

seq1  AGTATATCAGTCCAAACCCTCCAGAGCCGATCATCTTGCCCAGTGCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCAGTCCAAACCCTCCAGAGCCGATCATCTTGCCCAGTGCCCAC  150

seq1  CGGTTTCCTTCCATATCATCCAGAATTTTGCCTTCTGGGAGTGGAACCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCCTTCCATATCATCCAGAATTTTGCCTTCTGGGAGTGGAACCGG  200

seq1  AAGCTTATATTTCTCTTTTCTTCTTGGTGCCATCACATCTATTGGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTATATTTCTCTTTTCTTCTTGGTGCCATCACATCTATTGGCAGAT  250

seq1  GGATGAGATAAATAGTTAAAACTCTAGCATTGAAACTCATTTCTCCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGATAAATAGTTAAAACTCTAGCATTGAAACTCATTTCTCCTAAT  300

seq1  GTCTTTCCCAGAATTAAGATTAGGATCCTGAAGTCAATTCCAACTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCCAGAATTAAGATTAGGATCCTGAAGTCAATTCCAACTGGATA  350

seq1  AGCCATCCACAACATTCAAGTTAGAAATTCAGATACTTTGAAACCTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCACAACATTCAAGTTAGAAATTCAGATACTTTGAAACCTAAGA  400

seq1  GATACTGACATGTGTATGTATGTATGTATGTATATATATATGTAATAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGACATGTGTATGTATGTATGTATGTATATATATATGTAATAATA  450

seq1  TATACATAATATATGCAATACTCTTGTAGAGGATGATCTGGGTTCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAATATATGCAATACTCTTGTAGAGGATGATCTGGGTTCAGTTC  500

seq1  CCAGTGCCCACATGGCAGCTTATAACTCTCTGTAACTCGAGCTCTGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCCACATGGCAGCTTATAACTCTCTGTAACTCGAGCTCTGGGGC  550

seq1  CTGATATATTTGACCTCTTCAACTGGCACCTGTATACACACACACAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATATTTGACCTCTTCAACTGGCACCTGTATACACACACACAAAAT  600

seq1  TAAAAATTAAAAATAAATTTCTTAAAAATTAAAAATATCTACTGTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAAAAATAAATTTCTTAAAAATTAAAAATATCTACTGTGTTTC  650

seq1  ATTTAAATCAATACTTCAAAATTTCATGTAGGAGTTTATTAATATTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATCAATACTTCAAAATTTCATGTAGGAGTTTATTAATATTTAGC  700

seq1  AACACTATAGAATGTAATTAATTATCATTGTATAGAAATTAGCAAATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATAGAATGTAATTAATTATCATTGTATAGAAATTAGCAAATGAG  750

seq1  TAACGCGATTAATATATAATTAATAAATATTAGAAAAAATGCTTGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCGATTAATATATAATTAATAAATATTAGAAAAAATGCTTGAAATT  800

seq1  AGATGTGAAAGTAACCATGGTCTTCTTAGTATTTCTAGACTAAAACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAAAGTAACCATGGTCTTCTTAGTATTTCTAGACTAAAACAAAA  850

seq1  ACAAAAACAAATAAACAAAACCATGGTAAAGCAACTTTGGAATTACTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAATAAACAAAACCATGGTAAAGCAACTTTGGAATTACTTCA  900

seq1  TATAGTTTACAATCCACCTGAAAGGGGAGTCAGGGCAGGAACTCAAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTACAATCCACCTGAAAGGGGAGTCAGGGCAGGAACTCAAAGCA  950

seq1  GCAATTGCAGGCAGGTACTGAAGCCACCATGGCAGACCCCCCTGCTCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCAGGCAGGTACTGAAGCCACCATGGCAGACCCCCCTGCTCAAT  1000

seq1  AGCTTGTCCTGCTCCGAACTGGATCAACCAGCTTGGCTTTCTTAAACAAA  1050
      ||||||||||||| |||||||||||||||||||||||||||||||   ||
seq2  AGCTTGTCCTGCTTCGAACTGGATCAACCAGCTTGGCTTTCTTAA--CAA  1048

seq1  CCAGGCCCAAGGGTGGCACTGCTGGCCTGGGCCCTCCCCCATCTATCACT  1100
       || |||||| |||||||||||| ||||||| ||||||||||||||||| 
seq2  GCAAGCCCAA-GGTGGCACTGCT-GCCTGGGTCCTCCCCCATCTATCACC  1096

seq1  CCAACAGATCCGCATCTGCCCCTGAGTAAATCTAATGGAGGTATTTTGCC  1150
       ||||||||||||||||| |||||||||||||| ||||| ||| ||||||
seq2  TCAACAGATCCGCATCTG-CCCTGAGTAAATCT-ATGGA-GTA-TTTGCC  1142

seq1  ACTTGAATTAAATTTCTGTGGCCTTCTTCT-GGAATGTGGGATTCCTGTT  1199
      ||||| |||||| |||||||  || ||||| ||||||||||        |
seq2  ACTTG-ATTAAA-TTCTGTG--CTCCTTCTGGGAATGTGGG--------T  1180

seq1  ATCTGT  1205
      ||||||
seq2  ATCTGT  1186

seq1: chr5_42756974_42757277
seq2: B6Ng01-349J05.g_461_812 (reverse)

seq1  TTATTAGATATTTTCTTTATTTACATTTC-AAATA-------CTATCCTG  42
      ||||||||||||||||||||| ||||||| |||||       || |||||
seq2  TTATTAGATATTTTCTTTATTAACATTTCAAAATATTGTCCCCTTTCCTG  50

seq1  AGAGTTCCCTAT--ACCCTCCCCATTCCCTGCTCCCCTAC--CCACCCAC  88
       |  | |||| |  |    ||||  ||||  ||||  | |  |  | |||
seq2  -GTTTCCCCTCTGAAAAGCCCCCCGTCCCATCTCCTATTCCACTGCTCAC  99

seq1  TCCCACTTCTTGGTCCTGGCATTTCTCTGTACTGGGGCATGTACAGCTTG  138
      |||  |||||||| ||||| ||| | ||  |||| ||||  || ||| | 
seq2  TCCTGCTTCTTGGCCCTGGAATTCCCCTACACTGAGGCA--TAAAGCCTT  147

seq1  C--AAGACCTAGAGGCCTCTCTTCCCACTGATGGCCAACTAGGTAATCCT  186
      |  | |||| || ||||| || ||||| ||||| |  || |||  |||| 
seq2  CATAGGACCAAG-GGCCTTTCCTCCCATTGATGACTGACAAGGCCATCCA  196

seq1  CTGCTACATA------TGCAGCTA-GAGAC--------------------  209
      ||||||||||      || ||| | ||| |                    
seq2  CTGCTACATATATGGTTGAAGCCATGAGTCCCTCCATGGTTGGTTTGGTT  246

seq1  --AGGAGCTCTGGGGT---------TACTGCTTAGTTCATATTGTTGTTC  248
         ||||||| |||||         ||||  || ||||||||| || |||
seq2  CTGGGAGCTCGGGGGTGGGGTGGGGTACTAGTTGGTTCATATTTTTTTTC  296

seq1  CACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCT  298
      |  |||| ||| || | |||||||||||||||||||| |||||| |||||
seq2  CGGCTATGGGGCTGTAAACCCCTTCAGCTCCTTGGGTCCTTTCTTTAGCT  346

seq1  CCTCCA  304
      ||||||
seq2  CCTCCA  352