BAC Information

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BAC

Clone NameB6Ng01-350D04
Chromosome5 (Build37)
Map Location 115,759,132 - 115,902,396
singlet/doubletdoublet
Overlap geneSfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1
Upstream geneMyo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1
Downstream genePla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350D04.bB6Ng01-350D04.g
ACCGA130942GA130943
length1,0381,011
definitionB6Ng01-350D04.b B6Ng01-350D04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,901,353 - 115,902,396)(115,759,132 - 115,760,127)
sequence
gaattcactctgtagaccaggctggcctcgaattcaaggggatcttcctg
cctctgccgcccatgtgctgggattaagggcgtgtaacaccaccaacacc
gccgccaccgccaccaccaccactaccaccatcaccgccttgcctcgcta
atattcagctttttaacacagggtcttgttatgcacatcaggctgactgg
cagctcactttgtagcccaatctggctttgactttgtaatctacctgcct
ttgccttccgtgttcagggctaatgtataaacgttatttgtgtagatgtg
tgtactgtatgtatgtatacgggaggatataagtacacgtgtgtgtacct
gcacgtggaggtcagagattgatggcaactgccttctccagtctgacttt
ttgatacaggtactcccagggaacgtgggctaaatggctggctagtgagc
atcagggacccagccacctgtcagtgctgtgggtcccaggtccgggccgc
tgtgctcatctttctgggggtctaggggtctgaactcaggtccttgttgg
ttaagcgggtactttaccaattcacacatctcccccagagcctcactctg
tagccctagctggtctagaattcaaagtaatcctcctgccttggcctcag
attatagacaggcaatgtgccaccatgcctggcttaacttaaattggact
gtggcaggctaagcatcttctctcgtgcctgctggccactgctggcatcc
aggcccccctcttgtcgtggtctgggaactctatgaagtggagatggggc
tggcattcgagatagcatagctgagggttggcggcccagtgcccccacat
ccccccatctcctcacctcctgctacctcctccctgtttcagtggtaccc
attggtgaaggctgtgcaatcaagggaccctgaaaagaaagagttagact
ccgagatcctgggttgcattcagcaaccgtggggggggggtcttctgcta
tcccttgtggacccctattggtgagacacatgtcttct
gaattccttgaccaacctgaccgcttactcctccctcacctgaagaaagt
ataaagtgaccttgtggttccagagttgattcagagacactttccagaaa
ggactggcctcttgggagagattgcaatgtctgggtatgaggaaggtgtg
ttggtatgtagaggctggcactggcctggggctggcatgggagctgagct
tcggagccgaggactaggctgtagtgcaggaggattgaggctaagacaac
tcaggaggactagcctccccactagccactagctaagcatcagcctcgta
agtgtaagaggacacactgctgttcatggggaagtcaggcatatgcagag
atacctaatagcccctcagttcctgtcagtgggcaaagcagcccacagta
ggtgaaaaggatgggctgagaacagccttgtgtgtatatcccaacttggc
ttcctctgctattttctacagcaagctagtctgcccctctgcctctcaca
tctttttttttttttttgtttgtttgtttttgtttttgtttttcaagaca
ggttatctctgtgtagccctagctgtccttgaactcaggaagttacctgc
ctctgcctcccaagtgctgggattaaaggcctgtgccaccactgcccagc
tcccatcattcttttaaaggaaccatgatggaaaagggagattgcccatt
tggccatcatgaggacctgcattcagatcctccagcaccttcataaaatc
agacaaaagtaaacccagcactgcggaggtagagctgtgcaggtccctgg
agcccgttgatcagcttaatctagtaaaattgatcaactacaagttcagt
gagaggtctcgtcttcaaaggctggaagaagggccagggctttagcttca
gcggttagaacacttgcctaggcaagtgctaggccctgggttttggtcct
cagcttcaaaagcaaaacattgtgtgtcacacaatagggatttcatttcc
tggtgagtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115901353_115902396
seq2: B6Ng01-350D04.b_49_1086 (reverse)

seq1  AGAAGAACCTGTGTCTCACC-ATAGGGGTCCCACAGGGATAGCAGGAGCC  49
      ||||| || ||||||||||| ||||||||||   ||||||||||| || |
seq2  AGAAG-ACATGTGTCTCACCAATAGGGGTCCACAAGGGATAGCAGAAGAC  49

seq1  CCCCCCCCCACGGTTTGCCTGAATGCAACCCAGGATCCTCGGAGTCTAAC  99
      |||||||||||||||   |||||||||||||||||| |||||||||||||
seq2  CCCCCCCCCACGGTT--GCTGAATGCAACCCAGGAT-CTCGGAGTCTAAC  96

seq1  TCTTTTCTTTTCAGGGTCCCTTGATTGCCACAGCCTTCACCAATGGGTAC  149
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TC-TTTCTTTTCAGGGTCCCTTGATTG-CACAGCCTTCACCAATGGGTAC  144

seq1  CACTGAAACAGGGAGGAGGTAGCAGGAGGTGAGGAGATGGGGGGATGTGG  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACTGAAACAGGGAGGAGGTAGCAGGAGGTGAGGAGATGGGGGGATGT-G  193

seq1  GGGGCACTGGGCCGCCAACCCTCAGCTATGCTATCTCGAATGCCAGCCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACTGGGCCGCCAACCCTCAGCTATGCTATCTCGAATGCCAGCCCC  243

seq1  ATCTCCACTTCATAGAGTTCCCAGACCACGACAAGAGGGGGGCCTGGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACTTCATAGAGTTCCCAGACCACGACAAGAGGGGGGCCTGGATG  293

seq1  CCAGCAGTGGCCAGCAGGCACGAGAGAAGATGCTTAGCCTGCCACAGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTGGCCAGCAGGCACGAGAGAAGATGCTTAGCCTGCCACAGTCC  343

seq1  AATTTAAGTTAAGCCAGGCATGGTGGCACATTGCCTGTCTATAATCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTTAAGCCAGGCATGGTGGCACATTGCCTGTCTATAATCTGAG  393

seq1  GCCAAGGCAGGAGGATTACTTTGAATTCTAGACCAGCTAGGGCTACAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCAGGAGGATTACTTTGAATTCTAGACCAGCTAGGGCTACAGAG  443

seq1  TGAGGCTCTGGGGGAGATGTGTGAATTGGTAAAGTACCCGCTTAACCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTCTGGGGGAGATGTGTGAATTGGTAAAGTACCCGCTTAACCAAC  493

seq1  AAGGACCTGAGTTCAGACCCCTAGACCCCCAGAAAGATGAGCACAGCGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTGAGTTCAGACCCCTAGACCCCCAGAAAGATGAGCACAGCGGC  543

seq1  CCGGACCTGGGACCCACAGCACTGACAGGTGGCTGGGTCCCTGATGCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACCTGGGACCCACAGCACTGACAGGTGGCTGGGTCCCTGATGCTCA  593

seq1  CTAGCCAGCCATTTAGCCCACGTTCCCTGGGAGTACCTGTATCAAAAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGCCATTTAGCCCACGTTCCCTGGGAGTACCTGTATCAAAAAGT  643

seq1  CAGACTGGAGAAGGCAGTTGCCATCAATCTCTGACCTCCACGTGCAGGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGAGAAGGCAGTTGCCATCAATCTCTGACCTCCACGTGCAGGTA  693

seq1  CACACACGTGTACTTATATCCTCCCGTATACATACATACAGTACACACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGTGTACTTATATCCTCCCGTATACATACATACAGTACACACAT  743

seq1  CTACACAAATAACGTTTATACATTAGCCCTGAACACGGAAGGCAAAGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAAATAACGTTTATACATTAGCCCTGAACACGGAAGGCAAAGGCA  793

seq1  GGTAGATTACAAAGTCAAAGCCAGATTGGGCTACAAAGTGAGCTGCCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTACAAAGTCAAAGCCAGATTGGGCTACAAAGTGAGCTGCCAGT  843

seq1  CAGCCTGATGTGCATAACAAGACCCTGTGTTAAAAAGCTGAATATTAGCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATGTGCATAACAAGACCCTGTGTTAAAAAGCTGAATATTAGCG  893

seq1  AGGCAAGGCGGTGATGGTGGTAGTGGTGGTGGTGGCGGTGGCGGCGGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGCGGTGATGGTGGTAGTGGTGGTGGTGGCGGTGGCGGCGGTGT  943

seq1  TGGTGGTGTTACACGCCCTTAATCCCAGCACATGGGCGGCAGAGGCAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGTTACACGCCCTTAATCCCAGCACATGGGCGGCAGAGGCAGGA  993

seq1  AGATCCCCTTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCCTTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAATTC  1038

seq1: chr5_115759132_115760127
seq2: B6Ng01-350D04.g_66_1076

seq1  GAATTCCTTGACCAACCTGACCGCTTACTCCTCCCTCACCTGAAGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACCAACCTGACCGCTTACTCCTCCCTCACCTGAAGAAAGT  50

seq1  ATAAAGTGACCTTGTGGTTCCAGAGTTGATTCAGAGACACTTTCCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGACCTTGTGGTTCCAGAGTTGATTCAGAGACACTTTCCAGAAA  100

seq1  GGACTGGCCTCTTGGGAGAGATTGCAATGTCTGGGTATGAGGAAGGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCCTCTTGGGAGAGATTGCAATGTCTGGGTATGAGGAAGGTGTG  150

seq1  TTGGTATGTAGAGGCTGGCACTGGCCTGGGGCTGGCATGGGAGCTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGTAGAGGCTGGCACTGGCCTGGGGCTGGCATGGGAGCTGAGCT  200

seq1  TCGGAGCCGAGGACTAGGCTGTAGTGCAGGAGGATTGAGGCTAAGACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGCCGAGGACTAGGCTGTAGTGCAGGAGGATTGAGGCTAAGACAAC  250

seq1  TCAGGAGGACTAGCCTCCCCACTAGCCACTAGCTAAGCATCAGCCTCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGACTAGCCTCCCCACTAGCCACTAGCTAAGCATCAGCCTCGTA  300

seq1  AGTGTAAGAGGACACACTGCTGTTCATGGGGAAGTCAGGCATATGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGAGGACACACTGCTGTTCATGGGGAAGTCAGGCATATGCAGAG  350

seq1  ATACCTAATAGCCCCTCAGTTCCTGTCAGTGGGCAAAGCAGCCCACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAATAGCCCCTCAGTTCCTGTCAGTGGGCAAAGCAGCCCACAGTA  400

seq1  GGTGAAAAGGATGGGCTGAGAACAGCCTTGTGTGTATATCCCAACTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAGGATGGGCTGAGAACAGCCTTGTGTGTATATCCCAACTTGGC  450

seq1  TTCCTCTGCTATTTTCTACAGCAAGCTAGTCTGCCCCTCTGCCTCTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCTATTTTCTACAGCAAGCTAGTCTGCCCCTCTGCCTCTCACA  500

seq1  TCTTTTTTTTTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTCAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTCAAGACA  550

seq1  GGTTATCTCTGTGTAGCCCTAGCTGTCCTTGAACTCAGGAAGTTACCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTCTGTGTAGCCCTAGCTGTCCTTGAACTCAGGAAGTTACCTGC  600

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGTGCCACCACTGCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTGTGCCACCACTGCCCAGC  650

seq1  TCCCATCATTC-TTTAAAGGAACCATGATGGAAAAGGGAGATTGCCCATT  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCATTCTTTTAAAGGAACCATGATGGAAAAGGGAGATTGCCCATT  700

seq1  TGGCCATCATGAGGACCTGCATTCAGATCCTCCAGCACCTTCATAAAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCATGAGGACCTGCATTCAGATCCTCCAGCACCTTCATAAAATC  750

seq1  AGACAAAAGTAAACCCAGCACTGCGGAGGTAGAGCTGTGCAGGTCCCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGTAAACCCAGCACTGCGGAGGTAGAGCTGTGCAGGTCCCTGG  800

seq1  AGCCCGTTGATCAGC-TAATCTAGTAAAATTGATCAACTACAAGTTCAGT  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCCCGTTGATCAGCTTAATCTAGTAAAATTGATCAACTACAAGTTCAGT  850

seq1  GAGAGGTCTCGTC-TCAAAGGCTGG-AGAAGGGCCAGGGCTTTAGC-TCA  895
      ||||||||||||| ||||||||||| |||||||||||||||||||| |||
seq2  GAGAGGTCTCGTCTTCAAAGGCTGGAAGAAGGGCCAGGGCTTTAGCTTCA  900

seq1  GCGG-TAGAACACTTGCCTA-GCAAGTGCTAGGCCCTGGG-TTTGGTCCT  942
      |||| ||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GCGGTTAGAACACTTGCCTAGGCAAGTGCTAGGCCCTGGGTTTTGGTCCT  950

seq1  CAGC-TCAAAAGCAAAACA---TGTG-CACACAAATAGGATTTCATTTC-  986
      |||| ||||||||||||||   |||| |||||||   |||||||||||| 
seq2  CAGCTTCAAAAGCAAAACATTGTGTGTCACACAATAGGGATTTCATTTCC  1000

seq1  -TGTGAGTTTG  996
        |||||||||
seq2  TGGTGAGTTTG  1011