BAC Information

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BAC

Clone NameB6Ng01-350D05
Chromosome5 (Build37)
Map Location 24,349,134 - 24,350,298
singlet/doubletsinglet
Overlap genenone
Upstream geneTomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
Downstream genePrkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350D05.bB6Ng01-350D05.g
ACCGA130944GA130945
length1,2171,155
definitionB6Ng01-350D05.b B6Ng01-350D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaatactcatggactacccaaagaacttaggggtgggcagga
taaccactcattccttgttgtactggaatacccctaccctctattgggga
gagatttgttgacaaaaaaatgagggcacaactacatttctccccagaaa
gagccaaactattagattcagaggggaagcctattcatgtcctaaacact
gccctagccgaagagtgctggttttttgattttcttcccacatcagagga
cgaaattactacttggctagattgcttccccagtacttgggaagaggcaa
gaggagtcaggatggctcaacattggaccacagtatgaactgagctcaag
ccaggggtggaacctgtatgggtccaacagtaccccatattctgattgcc
aaggaaggcattaaacccccatattaggaggctaattaatgtgggaatcc
tgagaccaccttttttggcctgaaacatccccctcctacaagtcaagaag
ctcagaactgatgattatagactggaacaagacttaagagaggtaatcca
atgtgttctgcatatccacccaacagtccctaatccctataggtgctatt
cctccagagtgctggatttaaaggatgctttctctaggcacccaatagcc
aagacatctttgcctttgaatggcacaatccatggtgcaggattagcaga
cagccgacaacgatccatctgccccaaggatttaaaaactcacctaccat
ctttgatgagtccacccatgaagatttgagtgagtacagaaccctgcact
ctagcctgattctcttgcaatatgtggatgacctcctggtggcagcagag
accaaacaacaatgcctgaagggaacccaagacctcttgcaggccctggg
aaatatgggctactgagcctctgctaagaaagcacaattctgccaaccac
aggcgacctgtttagggtacgtattaaacataggtcagagatggctctct
gaggcaggaaggaatctgtcctttgtctcccaacacccagacttcctgcc
agttaaggaaattctggggtcactggattctgcaggattatgggatatca
gcttgcagaaatagctaaccacctcttatgagcctacaaatggtctactg
gaagcttaatgtgaccagaacataaaagctttatgccctcagagaagacc
ttaatttctggtgcatc
gaattcaatccacactggaataatagaatcttctaaattctccaatctga
catctaagaactttaagtcagcaactagaacatttttgaactttataact
acttctctgattactaatattcctagcctaaagcaatattgttaaacttt
ttgaaagaactcaaagagggatatttttgagtagatatcagaacacgata
caaagacacccaacaggaatatagatttcaattatgcatagcatgttgtt
tgtatcctgttctatttagtagtagtagtagtaatagtagtagtagtagc
agcagcagcagcagcagcagcagtaatagtgtgcagatgtgttcataaac
tagaacggatatagaggccaaagaacaaccacgagtcagttctttttcca
ctttggtatacactgatcaaagtcaggttgtgaggtttgtgtagcaagtg
gttttactggttgatgcaacttgctgaacctcccaccccactgcaaggta
accttatgctagctacattaccacggactaaagtgctacgagctcaagaa
cactggtggattggggcatctgctgaatatacgtttaacctgagtctgtt
ttaaaatacttaagatagttcaaaggggaaggcagttatggctcagttct
ctgagaacttgagttcatcttgggtccaatcccaagcaccgaataaacat
ggtttggaagtcggtaatcctagcatttggacagagaaaagagaattgaa
agatcaaggtagcagaacagcacttaatcccagcacctcggaggcagtga
caggtggatctctaagaattccaggccagcctggactacgtgagacccta
taaaaataagtctattgtgaagggcaaaaaattaaaggacaagtgtgctg
ttctctcttggcacctttatttccaggcctagcctttagtttgggacttc
gatgaactaggcctagggtctagctttccaccctgtcttcatatgaggat
atctcaactctctagtctctggaaacagagctttctgctgtacgactgtg
tagaaatatgacagctccctttcaagcatggtcggcccacacgagaacag
cttaggctcctcattttcctcgggcgttttgaacatggctgacttcacgt
tctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24349134_24350298
seq2: B6Ng01-350D05.g_64_1218 (reverse)

seq1  GGAGAAACGTGAAAGTCAGCCATTGTCAAAAACGCCGAGGAAAAGGAGGA  50
      |||| |||||| |||||||||||  ||||||   |||||||||| |||||
seq2  GGAG-AACGTG-AAGTCAGCCATGTTCAAAACGCCCGAGGAAAATGAGGA  48

seq1  GGCTTAGCTG-TCTGGTGTGGGCGGGCCATGCCTGAAAAGGGAAGGCTGT  99
      | || ||||| ||| |||||||| | |||||| || |||||||  |||||
seq2  GCCTAAGCTGTTCTCGTGTGGGCCGACCATGCTTG-AAAGGGA--GCTGT  95

seq1  CATATTTTCTACAACAGTCGTACAGGCAGAAAGCTCTTGTTTCCAGAGAA  149
      |||| ||||||| ||||||||||| ||||||||||| ||||||||||| |
seq2  CATA-TTTCTAC-ACAGTCGTACA-GCAGAAAGCTC-TGTTTCCAGAG-A  140

seq1  CTAGAGGAGTTGAGATATCCTCATATTGAAGAACAGGGTGGAAAGCTAGA  199
      ||||| ||||||||||||||||||| ||||| ||||||||||||||||||
seq2  CTAGA-GAGTTGAGATATCCTCATA-TGAAG-ACAGGGTGGAAAGCTAGA  187

seq1  CCCTAGGCCTAGTTCATCGAAGT-CCAAACTAAAGGCTAGGCCTGGAAAT  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCTAGGCCTAGTTCATCGAAGTCCCAAACTAAAGGCTAGGCCTGGAAAT  237

seq1  AAAGGTGCCAAGAGAGAACAGCACACTTGTCC-TTAATTTTTTGCCCTTC  297
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGGTGCCAAGAGAGAACAGCACACTTGTCCTTTAATTTTTTGCCCTTC  287

seq1  ACAATAGACTTATTTTTATAGGGTCTCACGTAGTCCAGGCTGGCCTGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGACTTATTTTTATAGGGTCTCACGTAGTCCAGGCTGGCCTGGAA  337

seq1  TTCTTAGAGATCCACCTGTCACTGCCTCCGAGGTGCTGGGATTAAGTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAGATCCACCTGTCACTGCCTCCGAGGTGCTGGGATTAAGTGCT  387

seq1  GTTCTGCTACCTTGATCTTTCAATTCTCTTTTCTCTGTCCAAATGCTAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTACCTTGATCTTTCAATTCTCTTTTCTCTGTCCAAATGCTAGG  437

seq1  ATTACCGACTTCCAAACCATGTTTATTCGGTGCTTGGGATTGGACCCAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGACTTCCAAACCATGTTTATTCGGTGCTTGGGATTGGACCCAAG  487

seq1  ATGAACTCAAGTTCTCAGAGAACTGAGCCATAACTGCCTTCCCCTTTGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCAAGTTCTCAGAGAACTGAGCCATAACTGCCTTCCCCTTTGAA  537

seq1  CTATCTTAAGTATTTTAAAACAGACTCAGGTTAAACGTATATTCAGCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAAGTATTTTAAAACAGACTCAGGTTAAACGTATATTCAGCAGA  587

seq1  TGCCCCAATCCACCAGTGTTCTTGAGCTCGTAGCACTTTAGTCCGTGGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAATCCACCAGTGTTCTTGAGCTCGTAGCACTTTAGTCCGTGGTA  637

seq1  ATGTAGCTAGCATAAGGTTACCTTGCAGTGGGGTGGGAGGTTCAGCAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTAGCATAAGGTTACCTTGCAGTGGGGTGGGAGGTTCAGCAAGT  687

seq1  TGCATCAACCAGTAAAACCACTTGCTACACAAACCTCACAACCTGACTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAACCAGTAAAACCACTTGCTACACAAACCTCACAACCTGACTTT  737

seq1  GATCAGTGTATACCAAAGTGGAAAAAGAACTGACTCGTGGTTGTTCTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGTATACCAAAGTGGAAAAAGAACTGACTCGTGGTTGTTCTTTG  787

seq1  GCCTCTATATCCGTTCTAGTTTATGAACACATCTGCACACTATTACTGCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATATCCGTTCTAGTTTATGAACACATCTGCACACTATTACTGCT  837

seq1  GCTGCTGCTGCTGCTGCTGCTACTACTACTACTATTACTACTACTACTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGCTGCTGCTGCTACTACTACTACTATTACTACTACTACTAC  887

seq1  TAAATAGAACAGGATACAAACAACATGCTATGCATAATTGAAATCTATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAACAGGATACAAACAACATGCTATGCATAATTGAAATCTATAT  937

seq1  TCCTGTTGGGTGTCTTTGTATCGTGTTCTGATATCTACTCAAAAATATCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGGGTGTCTTTGTATCGTGTTCTGATATCTACTCAAAAATATCC  987

seq1  CTCTTTGAGTTCTTTCAAAAAGTTTAACAATATTGCTTTAGGCTAGGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAGTTCTTTCAAAAAGTTTAACAATATTGCTTTAGGCTAGGAAT  1037

seq1  ATTAGTAATCAGAGAAGTAGTTATAAAGTTCAAAAATGTTCTAGTTGCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAATCAGAGAAGTAGTTATAAAGTTCAAAAATGTTCTAGTTGCTG  1087

seq1  ACTTAAAGTTCTTAGATGTCAGATTGGAGAATTTAGAAGATTCTATTATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGTTCTTAGATGTCAGATTGGAGAATTTAGAAGATTCTATTATT  1137

seq1  CCAGTGTGGATTGAATTC  1165
      ||||||||||||||||||
seq2  CCAGTGTGGATTGAATTC  1155