BAC Information

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BAC

Clone NameB6Ng01-350E02
Chromosome5 (Build37)
Map Location 104,090,709 - 104,216,510
singlet/doubletdoublet
Overlap geneAff1
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik
Downstream geneKlhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350E02.bB6Ng01-350E02.g
ACCGA130984GA130985
length1,180449
definitionB6Ng01-350E02.b B6Ng01-350E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,215,312 - 104,216,510)(104,090,709 - 104,091,162)
sequence
gaattcttttgcaacatggcacagaaaatggaataggtagttactctgaa
acaacaacaacaacacctgtcctaagtaggataacatcatcctctggcat
gtgagctcagtggtgggggctcccgacactttgtgtgtgctaattcaatg
cacctcacagatcccacaccggaagtcttgacacctccatcctgttgttc
tgagaagcctacagacacaaaaggatccttctggacaggtgtcctggggt
cctcggtgtgggaatccagactcatgtatagcctcatccagagttcccac
cactgagtacagcacctttattatgttgcttctagattagaaagccttgt
cttactaggtagtcctggctcacagatctgcaggcctctctgcctctctg
tcttttccctgtctccccgccgagatcaaaggtgtgaaccatcataccca
gggctctgctctttctttcaaaagtacaatattaaagcactttgggtacc
agtgaaagtaatttacagactacagattttaggagaagaaaattaaaagt
aagacacggtgagaggctgagttgtggagaccagcactggctccgggaga
ctgtggtagagcggccgggaaatgagcaggcaggaacagagcggactgct
gaaattcattacctgatccctggggaatttacaagagaacaatactcact
aataaaacaggcttatgttgaataatctctggaacctctgtgtgaccttg
aacaattttaactgtattgtgtggtcactttacctatctatgaagaccca
ggaagttttcatgacctgacttgagcaagtgtttagatgtgtagtcagtg
ggactggttagacttcagatttaaactcagtcttaagaagtggttaaagg
gccaatgagttgggaccagtgggtagaggagactgctaccaagactgaca
aaccaagccgatttccattccacacggtggaagaagaagagaaccaactc
cagccagtgaccctgatgaacgtaaaacatagtaaagagagtctgagtgg
ggttaaacaagctgagatagacctgctttgttcttgcacgtgcagacgag
tggcagaatctcaacagcctgaaattcaagttcagccagccttgctcgtg
gtcagtccaatcttctgattgctctccctc
aaggccagcctggtctacaaagtgagttccaggacagctaggggctgtta
tacagagaaatcctgtctcacaaaaacaaacaaactaaaaaatacattct
agtaaaaaaaaaaaatcagtagctagatcattaatgagcttactcagaaa
gtaattagaaaatatatcccactgacaatgggggagacaggacctgggac
aaactaaagtaaccaaagaagttaaagatgtcacatgaaaaacttttgtt
tgtttgttttgttttgttttttgagacaggatttctctgtgtatccctgg
ctgtcctggaactcattctatagaccaggctagcctcaaactcacacaga
tctgcctgcccctgcctcctgagtgctggacttaaagatgtgcgccatca
ccacctggtacaatgaaaattttaagacatttgaaaaaaaaattggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104215312_104216510
seq2: B6Ng01-350E02.b_45_1224 (reverse)

seq1  GAGGGAGAGCCAATCAGAAGATAGAACTGACCCACGGAGGCAGAGCTTGC  50
      ||||||||| |||||||||||| | ||||| |||||   |||  ||| ||
seq2  GAGGGAGAG-CAATCAGAAGATTGGACTGA-CCACG--AGCAAGGCTGGC  46

seq1  TGGACCTGTGATTTCAGCTGGTGGAGATTTCTGCACACTTCGTTCTGCAC  100
      || || ||  |||||||   || |||| |||||| ||| ||| |||||| 
seq2  TGAACTTG-AATTTCAGGCTGTTGAGA-TTCTGC-CAC-TCG-TCTGCA-  90

seq1  CGTGC-AGAACAAAGCAGGGTTCTTATCTCAGGCTTGTTTTAACCCCACT  149
      ||||| |||||||||||||  || ||||||| ||||| ||||||||||| 
seq2  CGTGCAAGAACAAAGCAGG--TC-TATCTCA-GCTTG-TTTAACCCCAC-  134

seq1  TCAGACTCTTCCTTTTACTAATGTTTTTACGTTCATCAGGGTCACTGGCT  199
      |||||||||    |||||| ||| ||||||||||||||||||||||||||
seq2  TCAGACTCT---CTTTACT-ATG-TTTTACGTTCATCAGGGTCACTGGCT  179

seq1  GGAGTTGGTTCTCTTCTTCTTCCACCGTGTGGAATGGAAATCGGCTTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGTTCTCTTCTTCTTCCACCGTGTGGAATGGAAATCGGCTTGGT  229

seq1  TTGTCAGTCTTGGTAGCAGTCTCCTCTACCCACTGGT-CCAACTCATTGG  298
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGTCAGTCTTGGTAGCAGTCTCCTCTACCCACTGGTCCCAACTCATTGG  279

seq1  CCC-TTAACCACCTTCTTAAGACTGAGTTTAAATCTGAAGTCTAACCAGT  347
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAACCA-CTTCTTAAGACTGAGTTTAAATCTGAAGTCTAACCAGT  328

seq1  CCCACTGACTACACATCTAAACACTTGCTCAAGTCAGGTCATGAAAACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGACTACACATCTAAACACTTGCTCAAGTCAGGTCATGAAAACTT  378

seq1  CCTGGGTCTTCATAGATAGGTAAAGTGACCACACAATACAGTTAAAATTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCTTCATAGATAGGTAAAGTGACCACACAATACAGTTAAAATTG  428

seq1  TTCAAGGTCACACAGAGGTTCCAGAGATTATTCAACATAAGCCTGTTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTCACACAGAGGTTCCAGAGATTATTCAACATAAGCCTGTTTTA  478

seq1  TTAGTGAGTATTGTTCTCTTGTAAATTCCCCAGGGATCAGGTAATGAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGTATTGTTCTCTTGTAAATTCCCCAGGGATCAGGTAATGAATT  528

seq1  TCAGCAGTCCGCTCTGTTCCTGCCTGCTCATTTCCCGGCCGCTCTACCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTCCGCTCTGTTCCTGCCTGCTCATTTCCCGGCCGCTCTACCAC  578

seq1  AGTCTCCCGGAGCCAGTGCTGGTCTCCACAACTCAGCCTCTCACCGTGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCGGAGCCAGTGCTGGTCTCCACAACTCAGCCTCTCACCGTGTC  628

seq1  TTACTTTTAATTTTCTTCTCCTAAAATCTGTAGTCTGTAAATTACTTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTAATTTTCTTCTCCTAAAATCTGTAGTCTGTAAATTACTTTCA  678

seq1  CTGGTACCCAAAGTGCTTTAATATTGTACTTTTGAAAGAAAGAGCAGAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACCCAAAGTGCTTTAATATTGTACTTTTGAAAGAAAGAGCAGAGC  728

seq1  CCTGGGTATGATGGTTCACACCTTTGATCTCGGCGGGGAGACAGGGAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTATGATGGTTCACACCTTTGATCTCGGCGGGGAGACAGGGAAAA  778

seq1  GACAGAGAGGCAGAGAGGCCTGCAGATCTGTGAGCCAGGACTACCTAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGGCAGAGAGGCCTGCAGATCTGTGAGCCAGGACTACCTAGTA  828

seq1  AGACAAGGCTTTCTAATCTAGAAGCAACATAATAAAGGTGCTGTACTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGCTTTCTAATCTAGAAGCAACATAATAAAGGTGCTGTACTCAG  878

seq1  TGGTGGGAACTCTGGATGAGGCTATACATGAGTCTGGATTCCCACACCGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAACTCTGGATGAGGCTATACATGAGTCTGGATTCCCACACCGA  928

seq1  GGACCCCAGGACACCTGTCCAGAAGGATCCTTTTGTGTCTGTAGGCTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCAGGACACCTGTCCAGAAGGATCCTTTTGTGTCTGTAGGCTTCT  978

seq1  CAGAACAACAGGATGGAGGTGTCAAGACTTCCGGTGTGGGATCTGTGAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAACAGGATGGAGGTGTCAAGACTTCCGGTGTGGGATCTGTGAGG  1028

seq1  TGCATTGAATTAGCACACACAAAGTGTCGGGAGCCCCCACCACTGAGCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAATTAGCACACACAAAGTGTCGGGAGCCCCCACCACTGAGCTC  1078

seq1  ACATGCCAGAGGATGATGTTATCCTACTTAGGACAGGTGTTGTTGTTGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCAGAGGATGATGTTATCCTACTTAGGACAGGTGTTGTTGTTGTT  1128

seq1  GTTTCAGAGTAACTACCTATTCCATTTTCTGTGCCATGTTGCAAAAGAAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGTAACTACCTATTCCATTTTCTGTGCCATGTTGCAAAAGAAT  1178

seq1  TC  1199
      ||
seq2  TC  1180

seq1: chr5_104090709_104091162
seq2: B6Ng01-350E02.g_65_519

seq1  GAATTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAGGGG  50

seq1  CTGTTATACAGAGAAATCCTGTCTCACAAAAACAAACAAACTAAAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATACAGAGAAATCCTGTCTCACAAAAACAAACAAACTAAAAAATA  100

seq1  CATTCTAGTAAAAAAAAAAAATCAGTAGCTAGATCATTAATGAGCTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGTAAAAAAAAAAAATCAGTAGCTAGATCATTAATGAGCTTACT  150

seq1  CAGAAAGTAATTAGAAAATATATCCCACTGACAATGGGGGAGACAGGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTAATTAGAAAATATATCCCACTGACAATGGGGGAGACAGGACC  200

seq1  TGGGACAAACTAAAGTAACCAAAGAAGTTAAAGATGTCACATGAAAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAAACTAAAGTAACCAAAGAAGTTAAAGATGTCACATGAAAAACT  250

seq1  TTTGTTTGTTTGTTTTGTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAT  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGTTTGTTTGTTTTGTTTTGTTTTTTGAGACAGGATTTCTCTGTGTAT  300

seq1  CCCTGGCTGTCCTGGAACTCATTCTATAGACCAGGCTAGCCTCAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCATTCTATAGACCAGGCTAGCCTCAAACTCA  350

seq1  CACAGATCTGCCTGCCCCTGCCTCCTGAGTGCTGGACTTAAAGATGTGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCTGCCTGCCCCTGCCTCCTGAGTGCTGGACTTAAAGATGTGCG  400

seq1  CCATCACCACCTGGTACAATGAAAATTTTAAGACA-ATGAAAAAAAAATT  449
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  CCATCACCACCTGGTACAATGAAAATTTTAAGACATTTGAAAAAAAAATT  450

seq1  GGGGG  454
      |||||
seq2  GGGGG  455