BAC Information

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BAC

Clone NameB6Ng01-350H01
Chromosome5 (Build37)
Map Location 83,097,011 - 83,231,295
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350H01.bB6Ng01-350H01.g
ACCGA131108GA131109
length9941,086
definitionB6Ng01-350H01.b B6Ng01-350H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,097,011 - 83,098,029)(83,230,208 - 83,231,295)
sequence
gaattccagatatcatttaaaatgggatcatgcaaacacatctgtaatcc
caacactcctattgtcagatgcaactcagagacaaaagaatccctgggaa
tttcaggcaaattagctttgaatattctgaaaaacaaaaacagtttctca
cgaggtgaatgtaatggcaaagatccatagagtggatttcctccaaccac
cccacaactgcccccctccacacactgtgacacaggatcgcatgcctgag
tatgaacacacacatatgggcatatgcacacaaagacatcagttgtatac
aataaacacacagagagagacagagagaaagagacagacagacagacaga
cagacagacacacacacacacacacacacacagagagagagagagagaga
gagagagagagagagagagagagagagagagagaatataatacggaaaag
gcatcgaaggatgccaaatcaatgaaacaaaactaagatgctctacaaga
gcagtacgtactcttcactactgaggttcatttccatcacttaactactg
acattgaagacaaattataatacaaaaaaatggtgaggctgattattata
atgaaattctttgttaaagtgcaaatactttatactagtaagtttaaggc
aatgagtaagtgattatatgtaagttatcttagaaggtttcgactcttaa
gatgcactagcacatgagctaccacaggcctaaaattcaagaagataaat
atgtatttgaataaagtcctgtctagaaaaaaaaatcgagattaacctaa
cagatgtggtgtgatagctcagcaatgtctgtctcctgttgttcagacaa
tcccatagactctcatctatagctgaatttcttttggtagcacatctata
ctgagtctagagattcatgagactggtgatctcatgcacttgaagctagg
agtgatatctatatctgtgaagatgcacgggaacgatggatgaa

gaattctctattatgagggtctaaggagtaataacttcttataaagtagg
aaaataatctaagtttatctgaacaaaataaaacccctgatctgaaaagt
caaacaagacactacttgcaatagaaaagtttccttcccacatctaaaat
taaatctgataaagtatccctaaaacaaaaatatctaagcaagtaaaaat
ctttacaaaacaacttttcatttttactagtaacatcagtagattagtga
aataaaatagtaaaatttgggtcttcaggatcctatgaagaattacatat
tatataaatttaataaaattcaattatctcttaaaagccaaatagagtat
taatgagaaatataggaaaatgtaaagaatgttgtgttaataataccagg
aatcaaggagaaaaaaaatgaaggctaaaagagtagttatttattttttt
attacatattttcctcagttacatttccaatgctatcccaaaagtccccc
ataccctctcccctacttccctacccacccgttcccattttttggccctg
gcgttcccctgtactggggcatataaagtttgtgtgtccaaagggcctct
cttttcagtgatggccgtctaggccatcttttgatacatatgcagctaga
gtcaacaactacgggttactggttagttcatattgttgttccacctatag
ggttgcagatctctttagctccttggatactttctctagctcctccattg
gggaccctgtgatccatccaatagctgactgtgagcatccacttctgtgt
ttgctaggccccggcctagtctcacaagagacaactatatcagggtcatt
tcagcaacacttgctagtgtatgcaatggtgtcatcgtttggaggctaat
tatgggatggatccctggatatggcagtctctagttgttccatccttttg
tctcagctccaaacgagtagttataagagcttggaaatggacaaagaaaa
cttcagtttcagttatcatggacagcttgggggagtcagtatactgtaca
ctaagaataaaacctagtagactgagcttgggataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83097011_83098029
seq2: B6Ng01-350H01.b_45_1038

seq1  GAATTCCAGATATCATTTAAAATGGGATCATGCAAACACATCTGTAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATATCATTTAAAATGGGATCATGCAAACACATCTGTAATCC  50

seq1  CAACACTCCTATTGTCAGATGCAACTCAGAGACAAAAGAATCCCTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCCTATTGTCAGATGCAACTCAGAGACAAAAGAATCCCTGGGAA  100

seq1  TTTCAGGCAAATTAGCTTTGAATATTCTGAAAAACAAAAACAGTTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCAAATTAGCTTTGAATATTCTGAAAAACAAAAACAGTTTCTCA  150

seq1  CGAGGTGAATGTAATGGCAAAGATCCATAGAGTGGATTTCCTCCAACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGAATGTAATGGCAAAGATCCATAGAGTGGATTTCCTCCAACCAC  200

seq1  CCCACAACTGCCCCCCTCCACACACTGTGACACAGGATCGCATGCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAACTGCCCCCCTCCACACACTGTGACACAGGATCGCATGCCTGAG  250

seq1  TATGAACACACACATATGGGCATATGCACACAAAGACATCAGTTGTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACACACACATATGGGCATATGCACACAAAGACATCAGTTGTATAC  300

seq1  AATAAACACACAGAGAGAGACAGAGAGAAAGAGACAGACAGACAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACACAGAGAGAGACAGAGAGAAAGAGACAGACAGACAGACAGA  350

seq1  CAGACAGACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGA  400

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATAATACGGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATAATACGGAAAAG  450

seq1  GCATCGAAGGATGCCAAATCAATGAAACAAAACTAAGATGCTCTACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAAGGATGCCAAATCAATGAAACAAAACTAAGATGCTCTACAAGA  500

seq1  GCAGTACGTACTCTTCACTACTGAGGTTCATTTCCATCACTTAACTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACGTACTCTTCACTACTGAGGTTCATTTCCATCACTTAACTACTG  550

seq1  ACATTGAAGACAAATTATAATACAAAAAAATGGTGAGGCTGATTATTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAGACAAATTATAATACAAAAAAATGGTGAGGCTGATTATTATA  600

seq1  ATGAAATTCTTTGTTAAAGTGCAAATACTTTATACTAGTAAGTTTAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCTTTGTTAAAGTGCAAATACTTTATACTAGTAAGTTTAAGGC  650

seq1  AATGAGTAAGTGATTATATGTAAGTTATCTTAGAAGGTTTCGACTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTAAGTGATTATATGTAAGTTATCTTAGAAGGTTTCGACTCTTAA  700

seq1  GATGCACTAGCACATGAGCTACCACAGGCCTAAAATTCAAGAAGATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTAGCACATGAGCTACCACAGGCCTAAAATTCAAGAAGATAAAT  750

seq1  ATGTATTTGAATAAAGTCCTGTCTAGAAAAAAAAATCGAGATTAACCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGAATAAAGTCCTGTCTAGAAAAAAAAATCGAGATTAACCTAA  800

seq1  CAGATGTGGTGTGATAGCTCAGCAATGTCTGTCTCCTGTTGTTCAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  CAGATGTGGTGTGATAGCTCAGCAATGTCTGTCTCCTGTTGTTCA-GAC-  848

seq1  AATCCCATAGACTCTCATTCTATAAGGCTGAATTTCTTTTGGTAGCCACA  900
      ||||||||||||||||| ||||||  ||||||||||||||||||| ||| 
seq2  AATCCCATAGACTCTCA-TCTATA--GCTGAATTTCTTTTGGTAG-CAC-  893

seq1  ATCTTATACTGAGGTCTAGAGGATTCATGGAGACCTGTTGATCTTCATTG  950
      ||| |||||||| ||||||| ||||||| |||| ||| ||||| ||| ||
seq2  ATC-TATACTGA-GTCTAGA-GATTCAT-GAGA-CTGGTGATC-TCA-TG  936

seq1  CACTTTGAAAGCCTTAAGAAGTGATATCTAATATCTGTGAAAGAATGCCA  1000
      |||||   ||||    || |||||||||| |||||||||||   ||| ||
seq2  CACTT--GAAGC---TAGGAGTGATATCT-ATATCTGTGAA--GATG-CA  977

seq1  CGGGAAAGGGATGGATGAA  1019
      ||||||   ||||||||||
seq2  CGGGAA--CGATGGATGAA  994


seq1: chr5_83230208_83231295
seq2: B6Ng01-350H01.g_65_1150 (reverse)

seq1  TTAT-CCAAGCTCCATGTCCTAACTAGTTTTA-TCTTAGTGGTACAGTAT  48
      |||| ||||||||  | | |||    |||||| ||||||| |||||||| 
seq2  TTATCCCAAGCTCAGTCTACTA---GGTTTTATTCTTAGT-GTACAGTA-  45

seq1  TACTGGAACTCCCC--AGCTGTCCATGATAACTG-AACTG-AGTTTTCTT  94
      |||||  |||||||  |||||||||||||||||| ||||| |||||||||
seq2  TACTG--ACTCCCCCAAGCTGTCCATGATAACTGAAACTGAAGTTTTCTT  93

seq1  TGTCCATTTCC-AGCTCTTAATAACTACTCGTTTGGAGCTGAGACAAAAG  143
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  TGTCCATTTCCAAGCTCTT-ATAACTACTCGTTTGGAGCTGAGACAAAAG  142

seq1  GATGGAACAACTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACAACTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGC  192

seq1  CTCCAAACGATGACACCATTGCATACACTAGCAAGTGTTTGCTGAAATGA  243
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCCAAACGATGACACCATTGCATACACTAGCAAGTG-TTGCTGAAATGA  241

seq1  CCCTGATATAGTTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATATAGTTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACA  291

seq1  GAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGTCCCCAATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGTCCCCAATG  341

seq1  GAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTATA  391

seq1  GGTGGAACAACAATATGAACTAACCAGTAACCCGTAGTTGTTGACTCTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAACAACAATATGAACTAACCAGTAACCCGTAGTTGTTGACTCTAG  441

seq1  CTGCATATGTATCAAAAGATGGCCTAGACGGCCATCACTGAAAAGAGAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGTATCAAAAGATGGCCTAGACGGCCATCACTGAAAAGAGAGG  491

seq1  CCCTTTGGACACACAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGACACACAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGG  541

seq1  CCAAAAAATGGGAACGGGTGGGTAGGGAAGTAGGGGAGAGGGTATGGGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATGGGAACGGGTGGGTAGGGAAGTAGGGGAGAGGGTATGGGGG  591

seq1  ACTTTTGGGATAGCATTGGAAATGTAACTGAGGAAAATATGTAATAAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGGATAGCATTGGAAATGTAACTGAGGAAAATATGTAATAAAAA  641

seq1  AATAAATAACTACTCTTTTAGCCTTCATTTTTTTTCTCCTTGATTCCTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAACTACTCTTTTAGCCTTCATTTTTTTTCTCCTTGATTCCTGG  691

seq1  TATTATTAACACAACATTCTTTACATTTTCCTATATTTCTCATTAATACT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAACACAACATTCTTTACATTTTCCTATATTTCTCATTAATACT  741

seq1  CTATTTGGCTTTTAAGAGATAATTGAATTTTATTAAATTTATATAATATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGCTTTTAAGAGATAATTGAATTTTATTAAATTTATATAATATG  791

seq1  TAATTCTTCATAGGATCCTGAAGACCCAAATTTTACTATTTTATTTCACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCATAGGATCCTGAAGACCCAAATTTTACTATTTTATTTCACT  841

seq1  AATCTACTGATGTTACTAGTAAAAATGAAAAGTTGTTTTGTAAAGATTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTGATGTTACTAGTAAAAATGAAAAGTTGTTTTGTAAAGATTTT  891

seq1  TACTTGCTTAGATATTTTTGTTTTAGGGATACTTTATCAGATTTAATTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTTAGATATTTTTGTTTTAGGGATACTTTATCAGATTTAATTTT  941

seq1  AGATGTGGGAAGGAAACTTTTCTATTGCAAGTAGTGTCTTGTTTGACTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGGAAGGAAACTTTTCTATTGCAAGTAGTGTCTTGTTTGACTTT  991

seq1  TCAGATCAGGGGTTTTATTTTGTTCAGATAAACTTAGATTATTTTCCTAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCAGGGGTTTTATTTTGTTCAGATAAACTTAGATTATTTTCCTAC  1041

seq1  TTTATAAGAAGTTATTACTCCTTAGACCCTCATAATAGAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGAAGTTATTACTCCTTAGACCCTCATAATAGAGAATTC  1086


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