BAC Information

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BAC

Clone NameB6Ng01-350J15
Chromosome5 (Build37)
Map Location 105,704,414 - 105,848,545
singlet/doubletdoublet
Overlap geneMpa2l, EG634650, Lrrc8b
Upstream geneIbsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578
Downstream geneLrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350J15.bB6Ng01-350J15.g
ACCGA131222GA131223
length1,122277
definitionB6Ng01-350J15.b B6Ng01-350J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,704,414 - 105,705,549)(105,848,269 - 105,848,545)
sequence
gaattcttactaaataggagccactttgcaccaagcatggtcaaggtaaa
gcacttgccttgccttgcaaagccctgactttggtcaccaacaccaacat
aaagctaaaggtaccagtcagtcttcatgtattctgactcctcttaagca
gtgttatgtgttcatgttttatgacatgcccttccctctgcactaaactc
ccatgctccctgctcctcatcttcatcaagtttccatgtttcctgcttat
cttcaacccattcacagcctggaaatgttccctgctcctccccttcaccc
ctttcctatgctccctgctcctcaccttcacccctttcctatgctccctg
ctccttaccttcacccctttcctgggaacctgccagtagtcatgttcaat
cttctccctcttgtccatgtaaagcttgtgtccacaaggaacaaaaaatg
ttgaaatattttccataaaatcctttgaaagtcgatccagttcttcttga
cagtatttatttgatgcctcttcattcttcgacaggaaaagctctttgtt
ctctcctattaattcctataagggacatgtacagagatctgacaaaattg
aaggaatagaagggaaaaaaattccaagaaacatcatagaagagccaact
tatttccaatgagaaagcattccagggtaataagacctcacggaatgtga
agtgctaaaacctgaactcagatgctcaaaaagatgtggaagcctaaact
aaatgttctttaggttcctggtcctcaaaaccttctgaaaagaccatcct
ataaactctggttccttgtgggtgtcacatcctgaaattctatcttcaag
gacacaatgatataacaaggaaccacagaagaacggtgtggtctacagag
actccagtgagaaacagtttcttagaacagaagattatagcaggttcagg
atgtactatagatgtcctgagcagatcacagtccacaaacattaactggg
taaaggacttagacacctatatactcatatcatctgtagaacattactag
aataaaaatactgaaatttggatggacatgcatcattcatactgaatctc
atgatactctgaacaccatatc
tccttaaaaagggacggggtttcgttctctctctctcttgctttttcgct
ctcttgctttttcgctctcttgcttcttgctctcttgcttcttgcactct
gttcctgaagatgtaagaataaagctttgccgcagaagattctggtctgt
ggtgttcttcctggccggtcgtgagaacgcgtctaataacaccccaccca
ctttaacaaggccatacgccctgactcctgatgcgtccactcctatggtg
tgtgtgtgtgtgtgtgtgtgagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_105704414_105705549
seq2: B6Ng01-350J15.b_47_1168

seq1  GAATTCTTACTAAATAGGAGCCACTTTGCACCAAGCATGGTCAAGGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTAAATAGGAGCCACTTTGCACCAAGCATGGTCAAGGTAAA  50

seq1  GCACTTGCCTTGCCTTGCAAAGCCCTGACTTTGGTCACCAACACCAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCCTTGCCTTGCAAAGCCCTGACTTTGGTCACCAACACCAACAT  100

seq1  AAAGCTAAAGGTACCAGTCAGTCTTCATGTATTCTGACTCCTCTTAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAGGTACCAGTCAGTCTTCATGTATTCTGACTCCTCTTAAGCA  150

seq1  GTGTTATGTGTTCATGTTTTATGACATGCCCTTCCCTCTGCACTAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATGTGTTCATGTTTTATGACATGCCCTTCCCTCTGCACTAAACTC  200

seq1  CCATGCTCCCTGCTCCTCATCTTCATCAAGTTTCCATGTTTCCTGCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCCCTGCTCCTCATCTTCATCAAGTTTCCATGTTTCCTGCTTAT  250

seq1  CTTCAACCCATTCACAGCCTGGAAATGTTCCCTGCTCCTCCCCTTCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCCATTCACAGCCTGGAAATGTTCCCTGCTCCTCCCCTTCACCC  300

seq1  CTTTCCTATGCTCCCTGCTCCTCACCTTCACCCCTTTCCTATGCTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTATGCTCCCTGCTCCTCACCTTCACCCCTTTCCTATGCTCCCTG  350

seq1  CTCCTTACCTTCACCCCTTTCCTGGGAACCTGCCAGTAGTCATGTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACCTTCACCCCTTTCCTGGGAACCTGCCAGTAGTCATGTTCAAT  400

seq1  CTTCTCCCTCTTGTCCATGTAAAGCTTGTGTCCACAAGGAACAAAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTCTTGTCCATGTAAAGCTTGTGTCCACAAGGAACAAAAAATG  450

seq1  TTGAAATATTTTCCATAAAATCCTTTGAAAGTCGATCCAGTTCTTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATTTTCCATAAAATCCTTTGAAAGTCGATCCAGTTCTTCTTGA  500

seq1  CAGTATTTATTTGATGCCTCTTCATTCTTCGACAGGAAAAGCTCTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTATTTGATGCCTCTTCATTCTTCGACAGGAAAAGCTCTTTGTT  550

seq1  CTCTCCTATTAATTCCTATAAGGGACATGTACAGAGATCTGACAAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTATTAATTCCTATAAGGGACATGTACAGAGATCTGACAAAATTG  600

seq1  AAGGAATAGAAGGGAAAAAAATTCCAAGAAACATCATAGAAGAGCCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAGAAGGGAAAAAAATTCCAAGAAACATCATAGAAGAGCCAACT  650

seq1  TATTTCCAATGAGAAAGCATTCCAGGGTAATAAGACCTCACGGAATGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAATGAGAAAGCATTCCAGGGTAATAAGACCTCACGGAATGTGA  700

seq1  AGTGCTAAAACCTGAACTCAGATGCTCAAAAAGATGTGGAAGCCTAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAAAACCTGAACTCAGATGCTCAAAAAGATGTGGAAGCCTAAACT  750

seq1  AAATGTTCTTTAGGTTCCTGGTCCTCAAAACCTTCTGAAAAGACCATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTTTAGGTTCCTGGTCCTCAAAACCTTCTGAAAAGACCATCCT  800

seq1  ATAAACTCTGGTTCCTTGTGGGTGTCACATCCTGAAATTCTATCTTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCTGGTTCCTTGTGGGTGTCACATCCTGAAATTCTATCTTCAAG  850

seq1  GACACAATGATATAACAAGGAACCACAGAAGAACGGTGTGGTCTACAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAATGATATAACAAGGAACCACAGAAGAACGGTGTGGTCTACAGAG  900

seq1  ACTCCAGTGAGAAACAGTTTCTTAGGAACAGAAGATTATAGCAGGTTCAA  950
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  ACTCCAGTGAGAAACAGTTTCTTA-GAACAGAAGATTATAGCAGGTTC-A  948

seq1  GGATGTACTATAGATGTCCTGAGCAGGATCACAGTCCACAAACATTAACT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGATGTACTATAGATGTCCTGAGCA-GATCACAGTCCACAAACATTAACT  997

seq1  GGGTAAAGGACTTAGGACA-CTATATACTCATTATTCCATCTGTTAGACA  1049
      |||||||||||||| |||| ||||||||||| |||  |||||||   |||
seq2  GGGTAAAGGACTTA-GACACCTATATACTCA-TAT--CATCTGTAGAACA  1043

seq1  TTACTAGAATAAAAATACTGGAAATTTGGGAAGGGGACATGCAATCATTC  1099
      ||||||||||||||||||| |||||||||     |||||||| |||||||
seq2  TTACTAGAATAAAAATACT-GAAATTTGG---ATGGACATGC-ATCATTC  1088

seq1  ATAACTGTATTCTTCATGATACTCTGAAACACATATC  1136
      || |||| ||   |||||||||||||||   ||||||
seq2  AT-ACTGAAT--CTCATGATACTCTGAACACCATATC  1122

seq1: chr5_105848269_105848545
seq2: B6Ng01-350J15.g_73_349 (reverse)

seq1  ACACACTCACACACACACACACACACACACCATAGGAGTGGACGCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACACACACACACACACACACACCATAGGAGTGGACGCATCAG  50

seq1  GAGTCAGGGCGTATGGCCTTGTTAAAGTGGGTGGGGTGTTATTAGACGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGGCGTATGGCCTTGTTAAAGTGGGTGGGGTGTTATTAGACGCG  100

seq1  TTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCA  150

seq1  AAGCTTTATTCTTACATCTTCAGGAACAGAGTGCAAGAAGCAAGAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTATTCTTACATCTTCAGGAACAGAGTGCAAGAAGCAAGAGAGCA  200

seq1  AGAAGCAAGAGAGCGAAAAAGCAAGAGAGCGAAAAAGCAAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGAGAGCGAAAAAGCAAGAGAGCGAAAAAGCAAGAGAGAGAGA  250

seq1  GAACGAAACCCCGTCCCTTTTTAAGGA  277
      |||||||||||||||||||||||||||
seq2  GAACGAAACCCCGTCCCTTTTTAAGGA  277