BAC Information

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BAC

Clone NameB6Ng01-350L19
Chromosome5 (Build37)
Map Location 121,104,761 - 121,237,712
singlet/doubletdoublet
Overlap geneRasal1, Dtx1, Oas2, Oas3, Oas1e
Upstream geneLOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886
Downstream geneOas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350L19.bB6Ng01-350L19.g
ACCGA131324GA131325
length6781,133
definitionB6Ng01-350L19.b B6Ng01-350L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,104,761 - 121,105,433)(121,236,569 - 121,237,712)
sequence
gaattccccacaccacccaccatatgagactctagcctagcccccctctt
gcaggacagcaaccatctggaggagcctgagccccttttggggggaggag
tacaccgttcaccttccattggacttccaccacctggccttctacgtgct
ggatgaggacaccgttgggtgtgtgatgggtgggcggggtgtgcatgagg
gtcccaagcctggatgccaagaggaggtgtgctgcctctaacccctcaat
ctgtgcccatggctccaggggatggggagggtcctggcctgaccttctcc
taccaccatcctgcagacacgatgacatcattgggaagatctcattgagc
aaagaggcgatcacagccgaccctcgaggtgagcagggcgtggcctgcag
aagagggagaatgggctgattcacaggggccttgcaaggacagagggagt
aggggcagggatggtgggggaccttatgcctttgatatgtgattcggttc
atctattgagcagctaactcatcttcatagacctggggttcacacagcag
aaacatgacaccccttcctatctgggactctgctccccatcccgtgtagt
cagcaactttcggtttggcctttttttttttttttttaaacagaatcttt
tctatcttttttatccaacccttggata
gaattcatagggtagaaggaaagaaaaaaattcatattgtcctctgacca
ccttctctatgctattacacatgtggacatgcatacatgcctatatgcat
acatatacacaggtgcacacagacaaacagatacacagactctgagggct
gaggccactggcttagggacactcccctagagagtgttagggctggaatc
ccatggactctgaagccactgtcaggttcatgaagcagcctgtcttcctt
atctcattgtcatgtaggcaatgggactcagtggggctgtgtcacaaaca
cagaggcacagagtgacctgcacttggacctttcccttctggggcagggt
ctgcgtgatgctagggaactgatgatgtcacgtgtgacctcagagtgggg
atgagcatgggtgcagtgacttgagaaagaaaccacaggagatcaggaag
gaagtgagagggggcatggagggaggcagctataggaacagtggcctgca
gtgctgtcctgcagagagatggctaagccacgtctcccacttggcagctc
tactaatgaagaaaggcctgcctgtggggctatatggaccctcaatggcc
atagtcatacaggtgtcctgatggccatctttcctacctccatttgtgct
gtccctcttctgaggagctccaggtacccagtcgtggttcccacccacag
ggctggtttacatccccctgcaaggaatgcaggctcctgacatgattgta
tgttattcattgcagccagagaaacaataatgtgtcttccagtgagcagt
gtagcacttgcctagaaaggctccagagtcaggatcatgtgctcctccgc
tgtaagactttgacctagagaggacaggatggtgctcatgtctccagcga
ggggtatccaacctgtgattagactccaggcttctgatccctgcctgccc
atggatagccttcctcacaggctgcttcatctgcttagcttcaacagtgt
tctctgggagtcagctgtgatggacagaagaagacgcagctcgacttcaa
tctgtccacctgtgggaagttctgttcattagtgctgatcgtcatcatcc
atccagcaaggcatgggggaggcatctgaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121104761_121105433
seq2: B6Ng01-350L19.b_51_728

seq1  GAATTCCCCACACCACCCACCATATGAGACTCTAGCCTAGCCCCCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACACCACCCACCATATGAGACTCTAGCCTAGCCCCCCTCTT  50

seq1  GCAGGACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAG  100

seq1  TACACCGTTCACCTTCCATTGGACTTCCACCACCTGGCCTTCTACGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCGTTCACCTTCCATTGGACTTCCACCACCTGGCCTTCTACGTGCT  150

seq1  GGATGAGGACACCGTTGGGTGTGTGATGGGTGGGCGGGGTGTGCATGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGACACCGTTGGGTGTGTGATGGGTGGGCGGGGTGTGCATGAGG  200

seq1  GTCCCAAGCCTGGATGCCAAGAGGAGGTGTGCTGCCTCTAACCCCTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGCCTGGATGCCAAGAGGAGGTGTGCTGCCTCTAACCCCTCAAT  250

seq1  CTGTGCCCATGGCTCCAGGGGATGGGGAGGGTCCTGGCCTGACCTTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCATGGCTCCAGGGGATGGGGAGGGTCCTGGCCTGACCTTCTCC  300

seq1  TACCACCATCCTGCAGACACGATGACATCATTGGGAAGATCTCATTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCATCCTGCAGACACGATGACATCATTGGGAAGATCTCATTGAGC  350

seq1  AAAGAGGCGATCACAGCCGACCCTCGAGGTGAGCAGGGCGTGGCCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCGATCACAGCCGACCCTCGAGGTGAGCAGGGCGTGGCCTGCAG  400

seq1  AAGAGGGAGAATGGGCTGATTCACAGGGGCCTTGCAAGGACAGAGGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGAATGGGCTGATTCACAGGGGCCTTGCAAGGACAGAGGGAGT  450

seq1  AGGGGCAGGGATGGTGGGGGACCTTATGCCTTTGATATGTGATTCGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGGATGGTGGGGGACCTTATGCCTTTGATATGTGATTCGGTTC  500

seq1  ATCTATTGAGCAGCTAACTCATCTTCATAGACCTGGGGTTCACACAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGAGCAGCTAACTCATCTTCATAGACCTGGGGTTCACACAGCAG  550

seq1  AAACATGACACCCCTTCCTATCTGGGACTCTGCTCCCCATCCCGTGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGACACCCCTTCCTATCTGGGACTCTGCTCCCCATCCCGTGTAGT  600

seq1  CAGCAAC-TTCGGTTTGGCC-TTTTTTTTTTTTTTTTAAACAGAATC-TT  647
      ||||||| |||||||||||| |||||||||||||||||||||||||| ||
seq2  CAGCAACTTTCGGTTTGGCCTTTTTTTTTTTTTTTTTAAACAGAATCTTT  650

seq1  TCTATC-TTTCTATCCAACCC-TGGATA  673
      |||||| ||| |||||||||| ||||||
seq2  TCTATCTTTTTTATCCAACCCTTGGATA  678

seq1: chr5_121236569_121237712
seq2: B6Ng01-350L19.g_69_1201 (reverse)

seq1  TCCCTCAGAGTGCACCCTCCCCCATGGCTTGCTGTGATTTGATGATGACG  50
      ||||||||| ||   ||||||||||| ||||||| || | ||||||||||
seq2  TCCCTCAGA-TG---CCTCCCCCATGCCTTGCTG-GA-TGGATGATGACG  44

seq1  ATCAGCCACTATTGGACAGAACCTCCCAACAGGTGGACAGATGGAAGTCG  100
      ||||| ||||| || ||||||| |||| |||||||||||||| |||||||
seq2  ATCAG-CACTAATGAACAGAACTTCCC-ACAGGTGGACAGATTGAAGTCG  92

seq1  AGCTTGCGTTCTTC-TCTGTCCATCACAGCCTGACTCCCAGAGAACACTG  149
      ||| |||| ||||| |||||||||||||| ||||||||||||||||||||
seq2  AGC-TGCG-TCTTCTTCTGTCCATCACAG-CTGACTCCCAGAGAACACTG  139

seq1  TTGGAAGCTAAGGCAGATGAAGCAGCCTGTGAGGAAGGCTATCCATGGGC  199
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TT-GAAGCTAA-GCAGATGAAGCAGCCTGTGAGGAAGGCTATCCATGGGC  187

seq1  AGGCAGGGATCAGAAGCCTGGAGTCTAATCACAGGTTGGATACCCCTCGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGATCAGAAGCCTGGAGTCTAATCACAGGTTGGATACCCCTCGC  237

seq1  TGGAGACATGAGCACCATCCTGTCCTCTCTAGGTCAAAGTCTTACAGCGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATGAGCACCATCCTGTCCTCTCTAGGTCAAAGTCTTACAGCGG  287

seq1  AGGAGCACATGATCCTGACTCTGGAGCC-TTCTAGGCAAGTGCTACACTG  348
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGAGCACATGATCCTGACTCTGGAGCCTTTCTAGGCAAGTGCTACACTG  337

seq1  CTCACTGGAAGACACATTATTGTTTCTCTGGCTGCAATGAATAACATACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGAAGACACATTATTGTTTCTCTGGCTGCAATGAATAACATACA  387

seq1  ATCATGTCAGGAGCCTGCATTCCTTGCAGGGGGATGTAAACCAGCCCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCAGGAGCCTGCATTCCTTGCAGGGGGATGTAAACCAGCCCTGT  437

seq1  GGGTGGGAACCACGACTGGGTACCTGGAGCTCCTCAGAAGAGGGACAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAACCACGACTGGGTACCTGGAGCTCCTCAGAAGAGGGACAGCA  487

seq1  CAAATGGAGGTAGGAAAGATGGCCATCAGGACACCTGTATGACTATGGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAGGTAGGAAAGATGGCCATCAGGACACCTGTATGACTATGGCC  537

seq1  ATTGAGGGTCCATATAGCCCCACAGGCAGGCCTTTCTTCATTAGTAGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGTCCATATAGCCCCACAGGCAGGCCTTTCTTCATTAGTAGAGC  587

seq1  TGCCAAGTGGGAGACGTGGCTTAGCCATCTCTCTGCAGGACAGCACTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTGGGAGACGTGGCTTAGCCATCTCTCTGCAGGACAGCACTGCA  637

seq1  GGCCACTGTTCCTATAGCTGCCTCCCTCCATGCCCCCTCTCACTTCCTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGTTCCTATAGCTGCCTCCCTCCATGCCCCCTCTCACTTCCTTC  687

seq1  CTGATCTCCTGTGGTTTCTTTCTCAAGTCACTGCACCCATGCTCATCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTCCTGTGGTTTCTTTCTCAAGTCACTGCACCCATGCTCATCCCC  737

seq1  ACTCTGAGGTCACACGTGACATCATCAGTTCCCTAGCATCACGCAGACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGGTCACACGTGACATCATCAGTTCCCTAGCATCACGCAGACCC  787

seq1  TGCCCCAGAAGGGAAAGGTCCAAGTGCAGGTCACTCTGTGCCTCTGTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGAAGGGAAAGGTCCAAGTGCAGGTCACTCTGTGCCTCTGTGTT  837

seq1  TGTGACACAGCCCCACTGAGTCCCATTGCCTACATGACAATGAGATAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACAGCCCCACTGAGTCCCATTGCCTACATGACAATGAGATAAGG  887

seq1  AAGACAGGCTGCTTCATGAACCTGACAGTGGCTTCAGAGTCCATGGGATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCTGCTTCATGAACCTGACAGTGGCTTCAGAGTCCATGGGATT  937

seq1  CCAGCCCTAACACTCTCTAGGGGAGTGTCCCTAAGCCAGTGGCCTCAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTAACACTCTCTAGGGGAGTGTCCCTAAGCCAGTGGCCTCAGCC  987

seq1  CTCAGAGTCTGTGTATCTGTTTGTCTGTGTGCACCTGTGTATATGTATGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTCTGTGTATCTGTTTGTCTGTGTGCACCTGTGTATATGTATGC  1037

seq1  ATATAGGCATGTATGCATGTCCACATGTGTAATAGCATAGAGAAGGTGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGCATGTATGCATGTCCACATGTGTAATAGCATAGAGAAGGTGGT  1087

seq1  CAGAGGACAATATGAATTTTTTTCTTTCCTTCTACCCTATGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACAATATGAATTTTTTTCTTTCCTTCTACCCTATGAATTC  1133