BAC Information

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BAC

Clone NameB6Ng01-350N10
Chromosome5 (Build37)
Map Location 4,121,253 - 4,122,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51
Downstream geneENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350N10.b
ACCGA131396
length1,006
definitionB6Ng01-350N10.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgatatttaccttatggagttccatgtttatgtcaaaacgga
aagctataatccctaataattaacacaacttgtaagccacctgaatgcct
ttccttacttgagtggagaagctgaaacattcagggcatgaaatattatt
tagtaccaaaaagaaatgaactgctgaggcactgaaagacacataggaaa
ctacaatgtatatttacaggtggaagaaaatgcatctgtgtgtataagca
tccaactccaactataggacagtcagtggtctccgggagctgagtgtgtg
tggacagaggaataaacagagtccagatttgggtcatgaaaaagctctgc
ttgatactggaataccaaacacatattattgcacatttgttcacagcaat
ataatgtgtaacattaagcatggatggtaacatcatcgacagactttgca
gtgcaacagacgaaggctaggacaagcttgagaccttggcaggtgtcagg
tcacataatgtattggaaatctctgctttcttcccacgggtgatgtgacc
ctacaacatgatgtgacctttaacttttttatcacttcatttatgaaata
ctaaccgctgtcctgcatagtcatcatctgtactgtgaaagaatggcttc
tggcctctctgccaccccacgagacataaacatcgtggttatgcacaccc
ttcatttccctcctagcatggacattagtaagaaccctgtaactgacatc
tttgtgagtgtcttgggcactctaccaagacaggagatttctccatgcat
agcttctgcttctgcagatttaatactgcataaaggtgtattcagtacta
ttgttacttactagaaaacatgctaacaaggtagctcagtgctttactac
gatattttgtctttgcaagagataaattttgatgacgatgcttttgctga
ctacctcacatggaaatctgtcaagggaaaaaccgatgcataccatcaca
tgctat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_4121253_4122251
seq2: B6Ng01-350N10.b_41_1046 (reverse)

seq1  ATAGCATGTGATGGTATGCATCTGTTTT--CCTTTACAGATTTCCATGTG  48
      |||||||||||||||||||||| |||||  |||| |||||||||||||||
seq2  ATAGCATGTGATGGTATGCATCGGTTTTTCCCTTGACAGATTTCCATGTG  50

seq1  AGGT-CTCAGC-AAAGTATAGTCATCAAAATTTATCTCTTTCAAAGACAA  96
      ||||  ||||| |||| || |||||||||||||||||||| |||||||||
seq2  AGGTAGTCAGCAAAAGCATCGTCATCAAAATTTATCTCTTGCAAAGACAA  100

seq1  AATATCGTAG-AAAGCACTGGGCAACCTTGTTGGATTGTTTTCTAGTAAG  145
      |||||||||| ||||||||| || |||||||| |  ||||||||||||||
seq2  AATATCGTAGTAAAGCACTGAGCTACCTTGTTAGCATGTTTTCTAGTAAG  150

seq1  GAACAATGGTAATGAATACACCCTTCTGCAGAATTAAA-CTGCAGAAGCA  194
       |||||| ||| |||||||||| || ||||| |||||| |||||||||||
seq2  TAACAATAGTACTGAATACACCTTTATGCAGTATTAAATCTGCAGAAGCA  200

seq1  GAAGCTATGCATGGAGAAATCTCCTGTCATGGTATAGTGCCCAAGACACT  244
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  GAAGCTATGCATGGAGAAATCTCCTGTCTTGGTAGAGTGCCCAAGACACT  250

seq1  CACAATGATGACAGTTCCAGGGTTCTTACTAATGTCCTTGCTAGGAGGGA  294
      ||||| |||| ||||| |||||||||||||||||||| ||||||||||||
seq2  CACAAAGATGTCAGTTACAGGGTTCTTACTAATGTCCATGCTAGGAGGGA  300

seq1  AAAGAAGGGTGTTTAAAACCACTGTGTTTATGTCTCCTGGGGTGGCAGAG  344
      || |||||||||  | ||||||  |||||||||||| |||||||||||||
seq2  AATGAAGGGTGTGCATAACCACGATGTTTATGTCTCGTGGGGTGGCAGAG  350

seq1  AGGCCAGAAGCCATTCTTTCACAGTACAGCTGATGACTTTGCAGGATAGC  394
      ||||||||||||||||||||||||||||| |||||||| ||||||| |||
seq2  AGGCCAGAAGCCATTCTTTCACAGTACAGATGATGACTATGCAGGACAGC  400

seq1  TGTTATTATTTTTTAAATGAACTTTTAAAAAAGTTAAAGGTCATTTCATG  444
       |||| |||||  |||||||| |  ||||||||||||||||||  |||||
seq2  GGTTAGTATTTCATAAATGAAGTGATAAAAAAGTTAAAGGTCACATCATG  450

seq1  TTGTAGGGTCACATCACCCGTGGGAAGAAAGCAGAGATTTCCAATACATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGGTCACATCACCCGTGGGAAGAAAGCAGAGATTTCCAATACATT  500

seq1  CTCTGCCCTGACACCTGCCAAGGTCTCCTGCTTGTCCTTGCCTTCCTCTG  544
       | || |||||||||||||||||||||  ||||||||| |||||| ||||
seq2  ATGTGACCTGACACCTGCCAAGGTCTCAAGCTTGTCCTAGCCTTCGTCTG  550

seq1  TTGCACTGCAAAGTCTGTCGATGATGTTACCATCCATGCTTAATGTTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGCAAAGTCTGTCGATGATGTTACCATCCATGCTTAATGTTACA  600

seq1  CATTCTATTGCTCTGAACAAATGTGCAATAATATGTGTCTGCTATTACAG  644
      |||| ||||||| ||||||||||||||||||||||||| || |||| |||
seq2  CATTATATTGCTGTGAACAAATGTGCAATAATATGTGTTTGGTATTCCAG  650

seq1  TATCAAGCAGAGCATTTTCATGACCCAAATCTTGACTCTGTTTATTCCTC  694
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TATCAAGCAGAGCTTTTTCATGACCCAAATCTGGACTCTGTTTATTCCTC  700

seq1  TGTCCACACACACTCAGCTCCCGGAGACCACTGACTGTCCTATAGTTGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACACACACTCAGCTCCCGGAGACCACTGACTGTCCTATAGTTGGA  750

seq1  GTTGGATGCTTATACACACA-CTGCATTTTCTTCCACCTGTAAATATACA  793
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GTTGGATGCTTATACACACAGATGCATTTTCTTCCACCTGTAAATATACA  800

seq1  TTGTAGTTTCCTCTGTGTCTTTCTGTGACTTTGCAGTTCATTTCTTTTTG  843
      |||||||||||| |||||||||| ||| ||  ||||||||||||||||||
seq2  TTGTAGTTTCCTATGTGTCTTTCAGTGCCTCAGCAGTTCATTTCTTTTTG  850

seq1  GTACTAAATAATATTTCATGCCCTGAATGTTTCAGCTTTTCCACTCATGT  893
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GTACTAAATAATATTTCATGCCCTGAATGTTTCAGCTTCTCCACTCAAGT  900

seq1  ATGGAAAGGCATCCTGGTTGCTTCCAAGTTGTGTTAATTATTAGTGATTA  943
      | |||||||||| | ||| |||| |||||||||||||||||||| |||||
seq2  AAGGAAAGGCATTCAGGTGGCTTACAAGTTGTGTTAATTATTAGGGATTA  950

seq1  TAGCTTTCTGTTTTGACATAAACTTTAAACTCCTTTAGGTAAATATCAAG  993
      |||||||| |||||||||||||| |  |||||| | ||||||||||||||
seq2  TAGCTTTCCGTTTTGACATAAACATGGAACTCCATAAGGTAAATATCAAG  1000

seq1  GAATTC  999
      ||||||
seq2  GAATTC  1006