BAC Information

Click to search

BAC

Clone NameB6Ng01-350P11
Chromosome5 (Build37)
Map Location 18,464,386 - 18,661,822
singlet/doubletdoublet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350P11.bB6Ng01-350P11.g
ACCGA131482GA131483
length1,1411,127
definitionB6Ng01-350P11.b B6Ng01-350P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,660,675 - 18,661,822)(18,464,386 - 18,465,526)
sequence
gaattccatgtacaacctcattttgttctcaataataccatgtctctggg
ttaaatatgtttgggaatattttattgaagattcttttatctgagttcat
tagaaatattggcttatgattgtcaatttcttccagtgtccagtctaatc
actttgggatctgactattgttagcttgtaaaatgagtttggaaatattt
atgtcatctgtaatttgctgaaagtcaaggaaggcttcttgtcagtttct
aaatggttgacaaaattcagcagagagacataagacactgtgctttaatt
tgatgggagaccttattgcccattagctttcctcacatgttaattggttg
gttagactttgttgctatcttgggatgacactatcttcatatgtagagta
atgttggtttcgaacttgtagggtttcttctttcatggccagagtactgt
gattacaattcccatattcagctgctgtttgtaatttataaattattttg
taatgttagtctcagaaggttataagtttgtaaaaatttgttctttttcc
caaattactcattttgttgtcttatcctttttcatatcatttacttgtgt
tatttcaattttggtgtaatatctattttatttatgattttatttatatg
acttttcctttttacttggtcatctaaatgttgcttgatttcatctctct
attttttttctgagtgagaactattttattgtcacatttgtcttaattca
tcttaataaatgatattcatatttaaaatattattcaagtaaataatatg
aattttcttttcttttttttttctctcattttcttttttcttggatattt
tctttatttagattttcagatttttatccccttcctgggtttcctggaaa
ccctgtatctcatcccccatccctcctccacctgcttctatgaagggtgt
aacaacaactagaaatgctaattctgtaagccatattaaatccaaatctc
ctgtggcaatcctgacagatttgcatctaatccagaagaacactagtagc
tacatctgtctgtcaatatcagtccaaaaatccccctcttctactctctt
tctctgttcacttgaatccacctacctgccaggtgaatggt

gaattcatatcctattttctttctgttatattttaagatttgtctcatct
ggaaagacttgacttcatcatggtcctaaggaattcctgtcctttcactt
aataccagcctccctatctctttctttctactccatttttcctcactcct
tataaatcttgctgttgtctggtgaaccttaaacgcattgggtcatactg
tctgagcatagctctgttctcaattttttttgtacatgatcctggagaat
taatatatgtagcatcaagttgcacactagacagaaaaaaattcataaag
atcaaaatacagaagttgatagattttggattttaaaaactattttcaat
tcacatttcatttaaattcattatagatataatatatatgtatattatat
atatattgtcattaatgattggaagggtgcaaatgtcattttaaaataag
aaaattatttttgatgactagagtttgaaagcatatgttttcatagacac
ttctgagtgaaaatcacttccttgcctttggctattttctttttcattcc
cagttttctctaacctgcttaagaaactttgcaaatatcaagagtcaaat
atttggattcagttagaaccctttctcacccatacccagaacttaagaaa
ctttttattctcattgtattttcaaataaccttttctttaacttcaagga
tttccaataagatagcaaaaaccatttgagactgtatagaaaaataatta
aaagtattgaattcttcaacctgtcttttttaaaaatgtaacatatattt
ttaaaaatcttataaaagacgattttttaaagcaagtgcactttggcatc
tgaaagagacattgaaaaaataaatttaaaagcagacactctgaataaaa
gcccagccagaagcaaagcactaagtgtccagactatgttccatgtcagt
gtcttccttgtaacttaaagtggtttgaagtcagcagattgggccatacg
agagactaccacacccacaccactccaccacacccacacacactcttccc
aaaatgcagaataattttaatgtccaaaactaaggctttgttactaaaga
aatgaggcctattcacttcttagctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18660675_18661822
seq2: B6Ng01-350P11.b_48_1188 (reverse)

seq1  ACCAATCACCTGGCAAGTAGGTGGAATTTCCAGGTTGAACAGAGGAAGAG  50
      |||| |||||||||| |||||||||  ||| ||  ||||||||| |||||
seq2  ACCATTCACCTGGCAGGTAGGTGGA--TTCAAG--TGAACAGAGAAAGAG  46

seq1  AGGAAGGAAGAGGGGGGATTTTTGGACTGGATATTGACAGGACAAGATGT  100
      || |  ||||| |||||||||||||||| |||||||||| ||| ||||||
seq2  AGTA--GAAGA-GGGGGATTTTTGGACT-GATATTGACA-GAC-AGATGT  90

seq1  AGCTACTAGTG-TCTTCTGGATTAGATGGCAAATCTGTCAGGATTTGCCA  149
      ||||||||||| ||||||||||||||| ||||||||||||||| ||||||
seq2  AGCTACTAGTGTTCTTCTGGATTAGAT-GCAAATCTGTCAGGA-TTGCCA  138

seq1  CAGGAAGATTTGGATTTAATATGGCTTACAAGATTAGCA-TTCTAGTTGT  198
      |||| |||||||||||||||||||||||||  ||||||| ||||||||||
seq2  CAGG-AGATTTGGATTTAATATGGCTTACAGAATTAGCATTTCTAGTTGT  187

seq1  TGTAACACCC-TCATAGAAGCAGGTGGAGGAGGGATGGGGGATGAGATAC  247
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACCCTTCATAGAAGCAGGTGGAGGAGGGATGGGGGATGAGATAC  237

seq1  AGGGTTTCCAGGAAACCAGGAAAGGGGAT-AAAATCTG-AAATCTAAATA  295
      |||||||||||||||||  | |||||||| |||||||| |||||||||||
seq2  AGGGTTTCCAGGAAACCCAGGAAGGGGATAAAAATCTGAAAATCTAAATA  287

seq1  AAGAAAATATCCAAGAAAAAAGAAAATGAGAG-AAAAAAAAAGAAAAGAA  344
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGAAAATATCCAAGAAAAAAGAAAATGAGAGAAAAAAAAAAGAAAAGAA  337

seq1  AATTCATATTATTTACTTGAATAATATTTTAAATATGAATATCATTTATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATATTATTTACTTGAATAATATTTTAAATATGAATATCATTTATT  387

seq1  AAGATGAATTAAGACAAATGTGACAATAAAATAGTTCTCACTCAGAAAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAATTAAGACAAATGTGACAATAAAATAGTTCTCACTCAGAAAAA  437

seq1  AAATAGAGAGATGAAATCAAGCAACATTTAGATGACCAAGTAAAAAGGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGAGATGAAATCAAGCAACATTTAGATGACCAAGTAAAAAGGAA  487

seq1  AAGTCATATAAATAAAATCATAAATAAAATAGATATTACACCAAAATTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATATAAATAAAATCATAAATAAAATAGATATTACACCAAAATTGA  537

seq1  AATAACACAAGTAAATGATATGAAAAAGGATAAGACAACAAAATGAGTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAAGTAAATGATATGAAAAAGGATAAGACAACAAAATGAGTAA  587

seq1  TTTGGGAAAAAGAACAAATTTTTACAAACTTATAACCTTCTGAGACTAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAAAAGAACAAATTTTTACAAACTTATAACCTTCTGAGACTAAC  637

seq1  ATTACAAAATAATTTATAAATTACAAACAGCAGCTGAATATGGGAATTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAATAATTTATAAATTACAAACAGCAGCTGAATATGGGAATTGT  687

seq1  AATCACAGTACTCTGGCCATGAAAGAAGAAACCCTACAAGTTCGAAACCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTACTCTGGCCATGAAAGAAGAAACCCTACAAGTTCGAAACCA  737

seq1  ACATTACTCTACATATGAAGATAGTGTCATCCCAAGATAGCAACAAAGTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTCTACATATGAAGATAGTGTCATCCCAAGATAGCAACAAAGTC  787

seq1  TAACCAACCAATTAACATGTGAGGAAAGCTAATGGGCAATAAGGTCTCCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAACCAATTAACATGTGAGGAAAGCTAATGGGCAATAAGGTCTCCC  837

seq1  ATCAAATTAAAGCACAGTGTCTTATGTCTCTCTGCTGAATTTTGTCAACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTAAAGCACAGTGTCTTATGTCTCTCTGCTGAATTTTGTCAACC  887

seq1  ATTTAGAAACTGACAAGAAGCCTTCCTTGACTTTCAGCAAATTACAGATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAACTGACAAGAAGCCTTCCTTGACTTTCAGCAAATTACAGATG  937

seq1  ACATAAATATTTCCAAACTCATTTTACAAGCTAACAATAGTCAGATCCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATATTTCCAAACTCATTTTACAAGCTAACAATAGTCAGATCCCA  987

seq1  AAGTGATTAGACTGGACACTGGAAGAAATTGACAATCATAAGCCAATATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTAGACTGGACACTGGAAGAAATTGACAATCATAAGCCAATATT  1037

seq1  TCTAATGAACTCAGATAAAAGAATCTTCAATAAAATATTCCCAAACATAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAACTCAGATAAAAGAATCTTCAATAAAATATTCCCAAACATAT  1087

seq1  TTAACCCAGAGACATGGTATTATTGAGAACAAAATGAGGTTGTACATGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCAGAGACATGGTATTATTGAGAACAAAATGAGGTTGTACATGGA  1137

seq1  ATTC  1148
      ||||
seq2  ATTC  1141


seq1: chr5_18464386_18465526
seq2: B6Ng01-350P11.g_68_1194

seq1  GAATTCATATCCTATTTTCTTTCTGTTATATTTTAAGATTTGTCTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCCTATTTTCTTTCTGTTATATTTTAAGATTTGTCTCATCT  50

seq1  GGAAAGACTTGACTTCATCATGGTCCTAAGGAATTCCTGTCCTTTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACTTGACTTCATCATGGTCCTAAGGAATTCCTGTCCTTTCACTT  100

seq1  AATACCAGCCTCCCTATCTCTTTCTTTCTACTCCATTTTTCCTCACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGCCTCCCTATCTCTTTCTTTCTACTCCATTTTTCCTCACTCCT  150

seq1  TATAAATCTTGCTGTTGTCTGGTGAACCTTAAACGCATTGGGTCATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCTTGCTGTTGTCTGGTGAACCTTAAACGCATTGGGTCATACTG  200

seq1  TCTGAGCATAGCTCTGTTCTCAATTTTTTTTGTACATGATCCTGGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCATAGCTCTGTTCTCAATTTTTTTTGTACATGATCCTGGAGAAT  250

seq1  TAATATATGTAGCATCAAGTTGCACACTAGACAGAAAAAAATTCATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATGTAGCATCAAGTTGCACACTAGACAGAAAAAAATTCATAAAG  300

seq1  ATCAAAATACAGAAGTTGATAGATTTTGGATTTTAAAAACTATTTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATACAGAAGTTGATAGATTTTGGATTTTAAAAACTATTTTCAAT  350

seq1  TCACATTTCATTTAAATTCATTATAGATATAATATATATGTATATTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTCATTTAAATTCATTATAGATATAATATATATGTATATTATAT  400

seq1  ATATATTGTCATTAATGATTGGAAGGGTGCAAATGTCATTTTAAAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTCATTAATGATTGGAAGGGTGCAAATGTCATTTTAAAATAAG  450

seq1  AAAATTATTTTTGATGACTAGAGTTTGAAAGCATATGTTTTCATAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTTGATGACTAGAGTTTGAAAGCATATGTTTTCATAGACAC  500

seq1  TTCTGAGTGAAAATCACTTCCTTGCCTTTGGCTATTTTCTTTTTCATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTGAAAATCACTTCCTTGCCTTTGGCTATTTTCTTTTTCATTCC  550

seq1  CAGTTTTCTCTAACCTGCTTAAGAAACTTTGCAAATATCAAGAGTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTCTAACCTGCTTAAGAAACTTTGCAAATATCAAGAGTCAAAT  600

seq1  ATTTGGATTCAGTTAGAACCCTTTCTCACCCATACCCAGAACTTAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATTCAGTTAGAACCCTTTCTCACCCATACCCAGAACTTAAGAAA  650

seq1  CTTTTTATTCTCATTGTATTTTCAAATAACCTTTTCTTTAACTTCAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTCTCATTGTATTTTCAAATAACCTTTTCTTTAACTTCAAGGA  700

seq1  TTTCCAATAAGATAGCAAAAACCATTTGAGACTGTATAGAAAAATAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATAAGATAGCAAAAACCATTTGAGACTGTATAGAAAAATAATTA  750

seq1  AAAGTATTGAATTCTTCAACCTGTCTTTTTTAAAAATGTAACATATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTGAATTCTTCAACCTGTCTTTTTTAAAAATGTAACATATATTT  800

seq1  TTAAAAATCTTATAAAAGACGATTTTTTAAAGCAAGTGCAC-TTGGCATC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAAAAATCTTATAAAAGACGATTTTTTAAAGCAAGTGCACTTTGGCATC  850

seq1  TGAAAGAGACATTGAAAAAAATAAATTTAAAAGCAGACACTCTGAATAAA  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGACATTG-AAAAAATAAATTTAAAAGCAGACACTCTGAATAAA  899

seq1  AGCCCAGCCAGAAGCAAAGCACTAAGTGTCCAGACTATG-TCCATGTCAG  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCCCAGCCAGAAGCAAAGCACTAAGTGTCCAGACTATGTTCCATGTCAG  949

seq1  TGTCTTCC-TGTAACTTAAAGTGG-TTGAAGTCAGCAGATTGGGCACATA  996
      |||||||| ||||||||||||||| |||||||||||||||||||| ||||
seq2  TGTCTTCCTTGTAACTTAAAGTGGTTTGAAGTCAGCAGATTGGGC-CATA  998

seq1  CAGAGAGACATACACACACACACACACACACACACACACACACACACACA  1046
      | ||||||| ||| ||||| ||||| ||| | ||| ||||| ||||||||
seq2  C-GAGAGAC-TAC-CACACCCACAC-CACTC-CAC-CACACCCACACACA  1042

seq1  CCAACACCCCTCCCCACAAATGCAGAATAATTTTAATGTCCAAAACTTAA  1096
             | || |||| ||||||||||||||||||||||||||||| |||
seq2  -------CTCTTCCCA-AAATGCAGAATAATTTTAATGTCCAAAAC-TAA  1083

seq1  GCCTTTGTAACCTAAAGAAATGAAGCCTTATCACTTCTTAGCTAC  1141
      | |||||| | |||||||||||| ||||  |||||||||||||||
seq2  GGCTTTGTTA-CTAAAGAAATGAGGCCTATTCACTTCTTAGCTAC  1127


| Home | SequenceCutter | Blast | Download |