Query= MSMg01no045_h12.b1 MSMg01no045_h12.b1 CHROMAT_FILE:
MSMg01no045_h12.b1 PHD_FILE: MSMg01no045_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:26 2005
(610 letters)
>mm_chr5_39488706_39489716
Length = 1011
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%), Gaps = 3/585 (0%)
Strand = Plus / Minus
Query: 5 gaattctataacagcatagaccatgtgtgtggggacattgttacaacttccccgttgtc- 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaattctataacagcatagaccatgtgtgtggggacattgttacaacttccccgttgtct 525
Query: 64 tttttttcccccagcacagccaggaagtgggcaaggctagtccagtattcctggtcagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttttttcccccagcacagccaggaagtgggcaaggctagtccagtattcctggtcagcc 465
Query: 124 aaaggagtcatgctcagtatgacctaaatgaagcattccagatattgggagctgatggct 183
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acaggagtcatgctcagtgtgacctaaatgaagcattccagatattgggagctgatggct 405
Query: 184 ggaaactaggcagaggcaagggagtgggcacagggagcaactgcctcttcctgaacaatt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggaaactaggcagaggcaagggagtgggcacagggagcaactgcctcttcctgaacaata 345
Query: 244 tttattttaaagctgagattcaagccagttgaatctggattaaaacctctgactttagga 303
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 344 tttattttaaagctgagattcaagccagttgaatctggattaaaacctctaactttagga 285
Query: 304 ctgggcaagatagattattctattttcactctctaaagtgatttctaaaatgtgaaaaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgggcaagatagattattctattttcactctctaaagtgatttctaaaatgtgaaaaat 225
Query: 364 acaatcatttatatcttttgaaatttttaaaaatataaaacaaaataataaaatcctagt 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 224 acaatcatttatatcttttgaaatttttaaatatataaaacaaaataataaaatcctagt 165
Query: 424 aggacctaattcatttatctaatttcaatgattatcatcatcattattaaactagtatta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aggacctaattcatttatctaatttcaatgattatcatcatcattattaaactagtatta 105
Query: 484 gaataacaggttagtttatgcactgttgtagtaataaatattgctaaatc-tacactggt 542
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 104 gaataacaggttagtttatgcactgttgtagtaataaatattgctaaa-catacactggt 46
Query: 543 ataaaataaaattttaaacactgaaaaccattcacttgggttttt 587
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ataaaacaaaattttaaacactgaaaaccattcacttgggttttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_h12.g1 MSMg01no045_h12.g1 CHROMAT_FILE:
MSMg01no045_h12.g1 PHD_FILE: MSMg01no045_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:26 2005
(617 letters)
>mm_chr5_39436747_39437764
Length = 1018
Score = 1139 bits (589), Expect = 0.0
Identities = 613/625 (98%), Gaps = 8/625 (1%)
Strand = Plus / Plus
Query: 1 catgtagattttcacagtttggttctagttgattctgacagtatcaggtgacatacttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 catgtagattttcacagtttggttctagttgattctgacagtatcaggtgacatatttct 260
Query: 61 acacacttccatatttcttatagacagaggttggaaccatgagttaagtctgactcaggt 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 acacacttccatatttcttatagacagaggttggaaccatgagttaggtctgactcaggc 320
Query: 121 tcatcagggttggtagactgcaatttgctttgtgttgcatttcatcggggcccatttt-g 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tcatcagggttggtagactgcaatttgctttgtgttgcatttcatcggggcccatttttg 380
Query: 180 ctgtgctaaaattcagatatagattgaaatggagcaaatcagtctcagtagctgattgtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgctaaaattcagatatagattgaaatggagcaaatcagtctcagtagctgattgtc 440
Query: 240 tttctaaggtaggattccagcactgatgctcaaagcttattttagccaattattttcaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctaaggtaggattccagcactgatgctcaaagcttattttagccaattattttcaat 500
Query: 300 cagagctttaaaacatttttctagatttatagttcttttttaaaatttgcaagctaggat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagctttaaaacatttttctagatttatagttcttttttaaaatttgcaagctaggat 560
Query: 360 tagtctgtaaataaattttcttggtggtttctttaccaccaagagctacttgttttctgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtctgtaaataaattttcttggtggtttctttaccaccaagagctacttgttttctgt 620
Query: 420 gccgtgcaatttggacaagagatacaagacaaatatttacttctaatgtccagagaaaac 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gccgtgcaatttggacaagagatacaagacaaatatttacttctaatgtctagagaaaac 680
Query: 480 agtt-------actgcccaagttacatcctgtgatagctactaaggtcatttcttcttcc 532
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttgatagttactgcccaagttacatcctgtgatagctactaaggtcatttcttcttcc 740
Query: 533 gcttctcctccttcccctcctcctcctccttgtccttcttctcctttgtttcttcttctg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcttctcctccttcccctcctcctcctccttgtccttcttctcctttgtttcttcttctg 800
Query: 593 tttttgtctctccccattttctctt 617
|||||||||||||||||||||||||
Sbjct: 801 tttttgtctctccccattttctctt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
