Query= MSMg01no045_j08.b1 MSMg01no045_j08.b1 CHROMAT_FILE:
MSMg01no045_j08.b1 PHD_FILE: MSMg01no045_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:34 2005
(375 letters)
>mm_chr5_78752492_78753266
Length = 775
Score = 679 bits (351), Expect = 0.0
Identities = 369/375 (98%), Gaps = 2/375 (0%)
Strand = Plus / Minus
Query: 2 gtagtcacctgcccattctcattgttacctaaatttgtataaccctatttatattctcat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtagtcacctgcccattctcattgttacctaaatttgtataaccctatttatattctcat 516
Query: 62 aaagatccaatgatgtcatctaagcaattcatatattagcttttgaagaaaacaggaatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aaagatccaatgatgtcatctaagcaattcatatattagcttttgaagaaaacaggaatg 456
Query: 122 actacatggatcctttagtcacaagaatacagagttatgggtacactttcttcagttctt 181
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 455 gctacatggatcctttagtcaca-gaatacagagttatgggtacactttcttcagttctt 397
Query: 182 taaaatgaactcaaggcaaaagtttctgactaagactgctactcctgcatctaaaatatc 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taaaatgacctcaaggcaaaagtttctgactaagactgctactcctgcatctaaaatatc 337
Query: 242 atcaaacataaaaaaaaa-tatctgttggattgttcttacatatgggacttacaggaaaa 300
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 336 atcaaacataaaaaaaaaatatccgttggattgttcttacatatgggacttacaggaaaa 277
Query: 301 aattaaggattcaattcacttttgcaaagtggaggtgcagtataatgacagcattgggaa 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aattaaggattcacttcacttttgcaaagtggaggtgcagtataatgacagcattgggaa 217
Query: 361 gcttaaatacaatct 375
|||||||||||||||
Sbjct: 216 gcttaaatacaatct 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_j08.g1 MSMg01no045_j08.g1 CHROMAT_FILE:
MSMg01no045_j08.g1 PHD_FILE: MSMg01no045_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:34 2005
(322 letters)
>mm_chr5_78598728_78599449
Length = 722
Score = 600 bits (310), Expect = e-176
Identities = 319/322 (99%)
Strand = Plus / Plus
Query: 1 atctgccatacaggaattaagaatgagtcacacgaagtgagtggaatcttttgcctagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgccatacaggaattaagaatgagtcacacgaagtgagtggaatcttttgcctagaa 260
Query: 61 attaaatgagaaactttaatatggctggacaatgcagtattttccatattttcaattatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaaatgagaaactttaatatggctggacaatgcagtattttccatattttcaattatg 320
Query: 121 aaaatgaactcatctccatgatatttgcatttcagagttcaattctgggttgagcaagca 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatgaactcatctccatgatatttgtatttcagagttcaattctgggttgagcaagca 380
Query: 181 gagagaagtttgcattatgctttattattgcgagttatgcttcttctagaatagacttgt 240
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gggagaagtttgcattatgctttattattgtgagttatgcttcttctagaatagacttgt 440
Query: 241 actagccacaggtagataataataaaactctaataatgatgatttcaattttccaaagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actagccacaggtagataataataaaactctaataatgatgatttcaattttccaaagta 500
Query: 301 gagattgagttcatataacctc 322
||||||||||||||||||||||
Sbjct: 501 gagattgagttcatataacctc 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
