Query= MSMg01no045_m20.b1 MSMg01no045_m20.b1 CHROMAT_FILE:
MSMg01no045_m20.b1 PHD_FILE: MSMg01no045_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:50 2005
(648 letters)
>mm_chr5_19358724_19359771
Length = 1048
Score = 656 bits (339), Expect = 0.0
Identities = 348/351 (99%)
Strand = Plus / Minus
Query: 5 gaattcaatgttcagattgttatcaggaaaaccattctcttagaatatataaagaacaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaattcaatgttcagattgttatcaggaaaaccattctcttagaatatataaagaacaac 292
Query: 65 gattttaataaaagattgaggaggttttttttctctactacacagccaaaattcttctgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gattttaataaaagattgaggaggttttttttctctactacacagccaaaattcttctgc 232
Query: 125 ttattatgcgggaaacccatgtcctatgttgttagaattctatcttaactccaccccaca 184
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 231 ttattatgcgggaaacccatgtcctatattgttagaattctatctaaactccaccccaca 172
Query: 185 gttacctggcaacagccaggtaggcctgacccactataaaaggggctgcttgtcccgtcc 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gttacctggcaacagccaagtaggcctgacccactataaaaggggctgcttgtcccgtcc 112
Query: 245 tccctctcttgtcctcttgcccttcccttcttactcctgctctgtcccttcccctatctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tccctctcttgtcctcttgcccttcccttcttactcctgctctgtcccttcccctatctc 52
Query: 305 tccacatggtcatggctggcctctactcctcttctctctgtctctttctct 355
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 tccacatggtcatggctggcctctactcctcttctctctgtctctttctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_m20.g1 MSMg01no045_m20.g1 CHROMAT_FILE:
MSMg01no045_m20.g1 PHD_FILE: MSMg01no045_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:51 2005
(621 letters)
>mm_chr5_19317024_19318044
Length = 1021
Score = 1170 bits (605), Expect = 0.0
Identities = 617/621 (99%), Gaps = 2/621 (0%)
Strand = Plus / Plus
Query: 1 attaatagggagccattaaagcaagagatttaatctgatggtcatttttactgacaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaatagggagccattaaagcaagagatttaatctgatggtcatttttactgacaacac 260
Query: 61 ataaagaaacattaactgtgcatgccaagtttatggttgaccccaaatttggactaatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaagaaacattaactgtgcatgccaagtttatggttgaccccaaatttggactaatgg 320
Query: 121 accaatcagttatatgactgaagcctgtgacaaagtttgaaaaatgtagttatgaataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaatcagttatatgactgaagcctgtgacaaagtttgaaaaatgtagttatgaataag 380
Query: 181 aaactgaatcccagaacaatcggagcaaataagcctgatggatatatatagcctaatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactgaatcccagaacaatcggagcaaataagcctgatggatatatatagcctaatata 440
Query: 241 aaattgctgttgcatgtgagcactccagttttccttttggactttgcttaacaaatgtaa 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 aaattgctgttgcatgtgagcactccagttttccttttggactttgtttaacaaatgtaa 500
Query: 301 agttggtctttagtttctttatcaccgagttgctcttagttttttccttaaagaaaggag 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 agttggtctttagtttctttatcaccgagttgctgttagttttttccttaaagaaaggag 560
Query: 361 gggatgaggtacggtggtgaggtgcagtacagggaacgaagcagcctcatcctcatcctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggatgaggtacggtggtgaggtgcagtacagggaacgaagcagcctcatcctcatcctg 620
Query: 421 ctggattactcgagtagctctgtctcttccaggggtgcaggggaggccacatctaatcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggattactcgagtagctctgtctcttccaggggtgcaggggaggccacatctaatcct 680
Query: 481 ttacgttgatagctagctcttttttttt-ctttttttttctttattatatttacgtaagt 539
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 681 ttacgttgatagctagctcttttttttttctttttttt-ctttattatatttacgtaagt 739
Query: 540 acactgtagctgtctttagacactccagaagagggcgtcagatctccttacggatggttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acactgtagctgtctttagacactccagaagagggcgtcagatctccttacggatggttg 799
Query: 600 ttagccaccatgtggttgctg 620
|||||||||||||||||||||
Sbjct: 800 ttagccaccatgtggttgctg 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
