TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCGATTGACACTGCATTATTTTAGTTTATGGGGTTTATGATAGGTG
ATGGCTTGATGAAAAGATCATTATTTTTAATTACAGAATTAAAATACATA
AGTATAATTTAAAAATAATAATCCATAAGTGTGCTCTCAAAAGTCATTTT
CCATAATGAAGTAGCCCACTCAATCGTCTTAAACTTACTCAGAAGCTACT
TGGCAGCACAAAAGTAACTGTCACGTACAATCTAGACCCAGAAAGAGGCT
ATGCCATGCCATGCAATAAGCACACATACATACACAACACACACTGCGTG
CCTGCTTAGATGGTATCTCATGTCAGAGGCTATACCATTGCTTTTACTGT
GTGTGAGTTGTCACTTTTCATGAAGACAAGAGAAAAAAATGAATTTCTCC
TCAAAGTGCACATGTATAGAAACCTTTATATTACAACCTGAAGGTGATTT
TGCCAAAAAAAAAAAAAACACTGCTTGCCATTCTTTTTTAAAGACTAGTT
GGTTTATTGTATAAATAAAAATATGTATGCATACCATGTGTATGCTTGAT
TCCTGAAGAGGCCAGAAGCGACTATCAGATCCCCCTAGAACTTCAGTTAT
AGAGAGCTGGCAGTCAGCAATGTGGTTCTAGGAAACAAACCCAAGTTCTC

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTGAAAGGGGAATCCATAAAGGTGT
GTTTTTAAATTCCTTGTTCTAAGAGTCACATGTAAAAATTACCCTTATGT
TAAAATTCTGTTGGCTAGGTTTGAGTGTTTGTGTTTCCCAAATTCATTTC
TAAAATAACATTACAGTGCTAAATCCCAGCCTAGGGATATTAGAAAGCAG
TAGCTTTGAGAGGTGTTTAGCTTATAGTGGTTCTGACAGTGTGAATGAAA
TGGGTGTTCTTATAAAGGTCCCTAAAGAGCTAGCTAGCCCTATGCCATGT
GAGGTCCCTAAAGAGCTAGATAGTTCTATGCCATGTGAGGTGTCTCAAAG
AGCTAGCTAGCCCTATGCCATGTGAGGTGTCCTAAAGAGCTAGCTAGCCC
TATGCCATGTGAGGTCCCTAAAGAGCTAGCTAGCCCTATGCCATGTGAGG
TGTCCTAAAGAGCTAGCTAGCCTTATGCCATGTGAGGTGTCTCAAAGAGC
TAGCTGGCCCTATGCCATGTGAGGTCCCTACAAGGCTAGCTAGCCCTATG
CCATGTGAGGTCCCTAAGGATGTAGTTAGCCCTATGCCATGTGAGGTCCC
TAAAGAGCTAGCTAGCCCTATGCCATGTGAGGTGTCCTAAAGAGCTA

Query= MSMg01no046_c11.b1 MSMg01no046_c11.b1 CHROMAT_FILE:
MSMg01no046_c11.b1 PHD_FILE: MSMg01no046_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:16 2005
         (564 letters)



>mm_chr5_9533288_9534251
          Length = 964

 Score = 1033 bits (534), Expect = 0.0
 Identities = 558/576 (96%), Gaps = 16/576 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccgattgacactgcattattttagtttatggggtttatgataggtgatggcttga 64
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaatcccgattgacagtgcattattttagtttatggggtttatgataggtgatggcttga 737

                                                                       
Query: 65  tgaaaagatcattatttttaattacagaattaaaatacataagtataatttaaaaataat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgaaaagatcattatttttaattacagaattaaaatacataagtataatttaaaaataat 677

                                                                       
Query: 125 aatccataagtgtgctctcaaaagtcattttccataatgaagtagcccactcaatcgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aatccataagtgtgctctcaaaagtcattttccataatgaagtagcccactcaatcgtct 617

                                                                       
Query: 185 taaacttactcagaagctacttggcagcacaaaagtaactgtcacgtacaatctagaccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 taaacttactcagaagctacttggcagcacaaaagtaactgtcacgtacaatctagaccc 557

                                                                       
Query: 245 agaaagaggctatgccatgccatgcaataagcacacatacatacacaacacacactgcgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agaaagaggctatgccatgccatgcaataagcacacatacatacacaacacacactgcgt 497

                                                                       
Query: 305 gcctgcttagatggtatctcatgtcagaggctataccattgcttttactgtgtgtgagtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcctgcttagatggtatctcatgtcagaggctataccattgcttttactgtgtgtgagtt 437

                                                                       
Query: 365 gtcacttttcatgaagacaagagaaaaaaatgaatttctcctcaaagtgcacatgtatag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtcacttttcatgaagacaagagaaaaaaatgaatttctcctcaaagtgcacatgtatag 377

                                                                       
Query: 425 aaacctttatattacaacctgaaggtgattttgcc----------------aaaaaaaaa 468
           |||||||||||||||||||||||||||||||||||                |||||||||
Sbjct: 376 aaacctttatattacaacctgaaggtgattttgccaaaaaaaaaaaaaaaaaaaaaaaaa 317

                                                                       
Query: 469 aaaaacactgcttgccattcttttttaaagactagttggtttattgtataaataaaaata 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaaaacactgcttgccattcttttttaaagactagttggtttattgtataaataaaaata 257

                                               
Query: 529 tgtatgcataccatgtgtatgcttgattcctgaaga 564
           ||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgtatgcataccatgtgtatgcttgattcctgaaga 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)