BAC Information

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BAC

Clone NameMSMg01-046D10
Chromosome5 (Build37)
Map Location 99,602,807 - 99,603,056
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm8, Fgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
Downstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046D10.T7 (MSMg01no046_d10.b1)MSMg01-046D10.TJ (MSMg01no046_d10.g1)
ACCAG276646AG276647
length678695
length of high quality
(start - end)
513 (34 - 546)252 (55 - 306)
definitionCHROMAT_FILE: MSMg01no046_d10.b1 PHD_FILE: MSMg01no046_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:20 2005CHROMAT_FILE: MSMg01no046_d10.g1 PHD_FILE: MSMg01no046_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCTTTGT
TCACTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTACTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCCGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCACATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTATCGAATATCAAGTGACCGTACGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTG
TCTCTATACTAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAG
CTTTAGGTCAGGCATGGTGATTCCACCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCTAACTATGCTCTGTTCCAAGATATAGCCAGGAAAGTATTTCTAGC
TGCCTCCAAAGGAAAGAGTTCCTACTGTCGAGATGGAGCGTACCCATTGC
ATCCTTTCTGTATTCCTCAGTACATTAGCAGGTTGTCAATCATAAAGAAC
ACTCTTGAGCTGTAGAGTCAGGCTTCTACTGAACTCCTTTCCCCAGGGGA
TCTCTGTCATAAGAGGGTGTGTGTGTATATGTGTGTGTGTGTGTGTGTGT
GTGTGTGCGTGACGTTCCCCTTCCCTATTTCCCACTTCACCACCTTTTCC
TCTCCCTTCCATTTTCCCCCTCCATTTTTCTAACACTATTCCCCATATTT
CTTTCTTATAACTTCTATCAATTATATTACACATATTATAGCCATTTCTT
TCTTTTATCCATCAAAACATTTAACGTAAAAATTTTTCCATTCTTTTTCC
TTTTTTTTCTCCTCCCATTTTTTTTTTAATTCTTTTCCTACTTCTTCCCA
TTTTTATTTTTTTTCGCCACCTCTACCTATTTCCCCCCCATATTTTATTT
ATTTTTTACCCTTTTTTACTCATCCACCCTGTTTTTTATTACCTTCATTT
TAAGATTATGTGTTCGTTTTTCTAACAATCTATATCTTTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_d10.g1 MSMg01no046_d10.g1 CHROMAT_FILE:
MSMg01no046_d10.g1 PHD_FILE: MSMg01no046_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:20 2005
         (252 letters)



>mm_chr5_99602607_99603258
          Length = 652

 Score =  429 bits (222), Expect = e-125
 Identities = 243/250 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaactatgctctgttccaagatatagccaggaaagtatttctagctgcctccaaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaactatgctctgttccaagatatagccaggaaagtatttctagctgcctccaaaggaa 260

                                                                       
Query: 61  agagttcctactgtcgagatggagcgtacccattgcatcctttctgtattcctcagtaca 120
           ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 261 agagttcctacagtcgagatggagtgtacccattgcatccttcctgtattcctcagtaca 320

                                                                       
Query: 121 ttagcaggttgtcaatcataaagaacactcttgagctgtagagtcaggcttctactgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcaggttgtcaatcataaagaacactcttgagctgtagagtcaggcttctactgaac 380

                                                                       
Query: 181 tcctttccccaggggatctctgtcataagagggtgtgtgtgtatatgtgtgtgtgtgtgt 240
           |||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 381 tcctttccccagggaatctctgtcataagagggtgtctgtgtgtgtgtgtgtgtgtgtgt 440

                     
Query: 241 gtgtgtgtgt 250
           ||||||||||
Sbjct: 441 gtgtgtgtgt 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)