BAC Information

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BAC

Clone NameMSMg01-046E10
Chromosome5 (Build37)
Map Location 99,602,807 - 99,603,054
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm8, Fgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
Downstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046E10.T7 (MSMg01no046_e10.b1)MSMg01-046E10.TJ (MSMg01no046_e10.g1)
ACCAG276693AG276694
length676695
length of high quality
(start - end)
249 (51 - 299)249 (56 - 304)
definitionCHROMAT_FILE: MSMg01no046_e10.b1 PHD_FILE: MSMg01no046_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:24 2005CHROMAT_FILE: MSMg01no046_e10.g1 PHD_FILE: MSMg01no046_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCAAATTTCCCGACGTGCGCGGAATTCTTTGTTCATTACAGAAAACAC
ATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTT
TATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATC
CTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGC
CTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATCCTCGATC
TTACAGCACAAGCCATTGCTGTACTGTTCAGGAATTTTTCCCCTGTGTTT
ATTCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCC
GGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTACTACAAGG
AGATAAGTATGGATCGATTCACATTCTTCTACTTGATAACAACCTGATTG
TGCCTGCTTCCATTGATGAATATGTTGTCATTCTTCCACTGAATGTTAAT
AGTCTCCCTTATCGAATAACTAGTGTTCGTCATAGTGTGTTTATCTTATC
TGGTACATCATTTCAAATCCAATGATATTATAGTCTGATATCTAATTAAA
TCCTGGATATTCTATTCCAATTTGTTCTCTTATTTAAATTATTCGTTTTG
TATGTATGACCCTCTCTATGTTTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTAACTATGCTCTGTTCCAAGATATAGCCAGGAAAGATTTCTAGC
TGCCTCCAAAGGAAAGAGTTCCTACTGTCGAGATGGAGCGTACCCATTGC
ATCCTTTCTGTATTCCTCAGTACATTAGCAGGTTGTCAATCATAAAGAAC
ACTCTTGAGCTGTAGAGTCAGGCTTCTACTGAACTCCTTTCCCCAGGGGA
TCTCTGTCATAAGAGGGTGTGTGTGTATATGTGTGTGTGTGTGTGTGTGT
GTTTTTTATATTAAAAATTCTTCTTAGCCCAACATCGCTACTTTTCTCCA
CCCTTCTACCTTCACCCGTTAATTTTCTTCATCCCACTTTCTTTTCCCCA
CCTATTATCTTTTCTTTTTATATTTCCACATTAATTTTTCTACAAATTAG
TTATTTTTATGAAAATGTGTTTGTATTACCTCATTATCTTGTTTCCACCT
TTTTCCCCTTTTAACCCACTTATTTCCCTTTTTCATCATTCCTTTTCGCC
TTCTTCTCCTTCTTTTTTCTTTCCTCTTTTTCGCTTACCGTATCTTATCC
TTTACTTTTTAAACATTTCCTCTTATTGTTACTTGTCTCTTCTTCTTCTT
ACTAATTCGCACTATACCCGTCATATTTTTTCTGTCTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_e10.g1 MSMg01no046_e10.g1 CHROMAT_FILE:
MSMg01no046_e10.g1 PHD_FILE: MSMg01no046_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:24 2005
         (249 letters)



>mm_chr5_99602607_99603256
          Length = 650

 Score =  418 bits (216), Expect = e-121
 Identities = 240/248 (96%), Gaps = 1/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaactatgctctgttccaagatatagccaggaaag-atttctagctgcctccaaaggaa 59
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctaactatgctctgttccaagatatagccaggaaagtatttctagctgcctccaaaggaa 260

                                                                       
Query: 60  agagttcctactgtcgagatggagcgtacccattgcatcctttctgtattcctcagtaca 119
           ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 261 agagttcctacagtcgagatggagtgtacccattgcatccttcctgtattcctcagtaca 320

                                                                       
Query: 120 ttagcaggttgtcaatcataaagaacactcttgagctgtagagtcaggcttctactgaac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcaggttgtcaatcataaagaacactcttgagctgtagagtcaggcttctactgaac 380

                                                                       
Query: 180 tcctttccccaggggatctctgtcataagagggtgtgtgtgtatatgtgtgtgtgtgtgt 239
           |||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 381 tcctttccccagggaatctctgtcataagagggtgtctgtgtgtgtgtgtgtgtgtgtgt 440

                   
Query: 240 gtgtgtgt 247
           ||||||||
Sbjct: 441 gtgtgtgt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)