BAC Information

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BAC

Clone NameMSMg01-046I15
Chromosome5 (Build37)
Map Location 13,722,084 - 13,722,693
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046I15.T7 (MSMg01no046_i15.b1)MSMg01-046I15.TJ (MSMg01no046_i15.g1)
ACCAG276891AG276892
length686780
length of high quality
(start - end)
616 (43 - 658)610 (165 - 774)
definitionCHROMAT_FILE: MSMg01no046_i15.b1 PHD_FILE: MSMg01no046_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:43 2005CHROMAT_FILE: MSMg01no046_i15.g1 PHD_FILE: MSMg01no046_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTATGAGCCCCATTTTTTAATGGGGTTATTGAATTTTCT
GGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATGCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAG
GTCCCATTTGTTAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTC
TTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTCTTCCACTTAATGGTTTTAGCTCCCTTGTTAAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTTTTTTTAATCAGAA
TTGCTCTGTAGTAGAGCTTTAGGTCAGGCATGGTGA
NNNNNTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TNNNNNNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATGATXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTATGTAGGTTTCGGGTTATAGTTGGAAAAATTTC
TTAGTCTTAGGAAATGAGCAGTTTTAGCATAGAATGTATTAAAAGAGGTC
ATTTGTGACTTATAAAATGGATAATTCATTCAACAGTATAGAATTGATTC
AGTCACTGATAATAGAAATACTTCAAGTAATCTTTAGAATCTATTGATGT
CTGTATTACATACAAATATCACTATTATCTACTAGTTGTTCATGAGACTT
TCTTTGGAAAGAAAATAAAATTGTTGCATTTACTATGGAATGTCGGCTTG
CGAACCTGGACATGCAAGGTAAATATCTGAGCCTTATAAAACATCAGGAA
TTTAGCAGAGATCATGTACAATCACAGATGGGTAGATTGGTTTCATAAGT
CAATTGCTAGCCACTGCTGAGCTTGAGAGCCCAGTAATATGAAACTGTTT
TTTGAGTGATTGCTCTTTTGTGGAACCAAATCACAAAGCAGTGCTGACAT
ATGANACAGATAAAAATCAGCCGAGATATAATGAGACCACCGTCGGTATT
ATCACTGTTCACTGGGAAGCTACTTTCTGCAGTTGCATGTGAATTCCACA
AATTATGCTCACATTTGTTATGCACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_i15.g1 MSMg01no046_i15.g1 CHROMAT_FILE:
MSMg01no046_i15.g1 PHD_FILE: MSMg01no046_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:43 2005
         (610 letters)



>mm_chr5_13721884_13722893
          Length = 1010

 Score = 1166 bits (603), Expect = 0.0
 Identities = 608/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgtaggtttcgggttatagttggaaaaatttcttagtcttaggaaatgagcagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatgtaggtttcgggttatagttggaaaaatttcttagtcttaggaaatgagcagttt 260

                                                                       
Query: 61  tagcatagaatgtattaaaagaggtcatttgtgacttataaaatggataattcattcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcatagaatgtattaaaagaggtcatttgtgacttataaaatggataattcattcaac 320

                                                                       
Query: 121 agtatagaattgattcagtcactgataatagaaatacttcaagtaatctttagaatctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatagaattgattcagtcactgataatagaaatacttcaagtaatctttagaatctat 380

                                                                       
Query: 181 tgatgtctgtattacatacaaatatcactattatctactagttgttcatgagactttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtctgtattacatacaaatatcactattatctactagttgttcatgagactttctt 440

                                                                       
Query: 241 tggaaagaaaataaaattgttgcatttactatggaatgtcggcttgcgaacctggacatg 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaagaaaataaaattgttgcaattactatggaatgtcggcttgcgaacctggacatg 500

                                                                       
Query: 301 caaggtaaatatctgagccttataaaacatcaggaatttagcagagatcatgtacaatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaggtaaatatctgagccttataaaacatcaggaatttagcagagatcatgtacaatca 560

                                                                       
Query: 361 cagatgggtagattggtttcataagtcaattgctagccactgctgagcttgagagcccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatgggtagattggtttcataagtcaattgctagccactgctgagcttgagagcccag 620

                                                                       
Query: 421 taatatgaaactgttttttgagtgattgctcttttgtggaaccaaatcacaaagcagtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatatgaaactgttttttgagtgattgctcttttgtggaaccaaatcacaaagcagtgc 680

                                                                       
Query: 481 tgacatatganacagataaaaatcagccgagatataatgagaccaccgtcggtattatca 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacatatgaaacagataaaaatcagccgagatataatgagaccaccgtcggtattatca 740

                                                                       
Query: 541 ctgttcactgggaagctactttctgcagttgcatgtgaattccacaaattatgctcacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgttcactgggaagctactttctgcagttgcatgtgaattccacaaattatgctcacat 800

                     
Query: 601 ttgttatgca 610
           ||||||||||
Sbjct: 801 ttgttatgca 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)