Query= MSMg01no046_l20.b1 MSMg01no046_l20.b1 CHROMAT_FILE:
MSMg01no046_l20.b1 PHD_FILE: MSMg01no046_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:57 2005
(621 letters)
>mm_chr5_41613135_41614156
Length = 1022
Score = 1083 bits (560), Expect = 0.0
Identities = 607/630 (96%), Gaps = 13/630 (2%)
Strand = Plus / Plus
Query: 5 gaattctttccta-ttcccccatttctgccatctttttctctcagtttatctctcagcat 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcctagttcacccatttctgccatctttttctctcagtttatctctcagcat 264
Query: 64 ctctgtttctctggaacttatataaacaaactctggtccacagagcctctgcatctcctc 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 ctctgtttctctggaacttatataaacaaattctggtccacagagcctctgcatctcctc 324
Query: 124 gtgaaactttgaagtatccatgagctctaactatggacttttccttctaatttaaaatgt 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 gtgaaactttgaagtatccatgagctctaactatggacttgtccttctaatttaaaatgt 384
Query: 184 ctatatttagcttaatatacaaacatttaatttttagcaggacacagacgctatgaagga 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctatatttaacttaatatacaaacatttaatttttagcaggacacagacgctatgaagga 444
Query: 244 gaaagggaaaagcagggggaaactctaatgggggaggtaaaagcaagaatatagatggag 303
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaagggaaaagcagggggaatctctaatgggggaggtaaaagcaagaatatagatggag 504
Query: 304 aagaaggaagagataaagagcactaaggttatttgcaaaaggcacaggaaaatgtattat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaaggaagagataaagagcactaaggttatttgcaaaaggcacaggaaaatgtattat 564
Query: 364 tttataagtttacacaagtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtg---------- 413
|||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 tttataagcttacacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 624
Query: 414 --ataaagttatgattcaaagatgaaatgacccctacacaaatcatagaccatctaacaa 471
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 tgataaatttatgattcaaagatgaaatgacccctacacgaatcatagaccatctaacaa 684
Query: 472 aaacaccagggtcaaaaacctccttttaaattgttggttagggaggtccaagaggcttcc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaacaccagggtcaaaaacctccttttaaattgttggttagggaggtccaagaggcttcc 744
Query: 532 agaacaatgtagtctatttctctcccccttagttgcatctcagaaagtaagactctattg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaacaatgtagtctatttctctcccccttagttgcatctcagaaagtaagactctattg 804
Query: 592 ccaagcactacttacaaatgttatacctag 621
||||| ||||||||||||||||||||||||
Sbjct: 805 ccaagtactacttacaaatgttatacctag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no046_l20.g1 MSMg01no046_l20.g1 CHROMAT_FILE:
MSMg01no046_l20.g1 PHD_FILE: MSMg01no046_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:58 2005
(612 letters)
>mm_chr5_41756875_41757886
Length = 1012
Score = 924 bits (478), Expect = 0.0
Identities = 487/490 (99%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 123 tctttgttttgcattaacg-tttttttaattaggtattttcttcatttacatttcaaatg 181
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 tctttgttttgcattaatgttttttttaattaggtattttcttcatttacatttcaaatg 953
Query: 182 ctaccccaaaagtcccccataccctcccctacccacccactcctacttcttggccctggc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ctaccccaaaagtcccccataccctcccctacccacccactcctacttcttggccctggc 893
Query: 242 gttcccctgtactgaagcatataaagtttgcaagaccaaggggcctctcttcccaatgat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 gttcccctgtactgaagcatataaagtttgcaagaccaaggggcctctcttcccaatgat 833
Query: 302 ggctgactaggccatcttctgaattccagcaaacagtaaacatctcctactgccactcag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ggctgactaggccatcttctgaattccagcaaacagtaaacatctcctactgccactcag 773
Query: 362 ggccaggtactctttgagcaggtattggatgttgaatgcatacacatccttgaataaccc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ggccaggtactctttgagcaggtattggatgttgaatgcatacacatccttgaataaccc 713
Query: 422 tgacatgactccaaattgtttgcatttcctggaagaaagatgtgtacaaagaaggggaag 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tgacatggctccaaattgtttgcatttcctggaagaaagatgtgtacaaagaaggggaag 653
Query: 482 atgagctgccaaggagatcctgaatggcatctctcaagagctttgtgggcttaaatgaca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atgagctgccaaggagatcctgaatggcatctctcaagagctttgtgggcttaaatgaca 593
Query: 542 cggtgttgaggtgacaagaaaaacgatccctctctgagagtaagcgctacgtcagcctat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cggtgttgaggtgacaagaaaaacgatccctctctgagagtaagcgctacgtcagcctat 533
Query: 602 atgaaactac 611
||||||||||
Sbjct: 532 atgaaactac 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
