This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
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Search Result
BAC
Clone Name
MSMg01-046O06
Chromosome
5 (Build37)
Map Location
85,608,561 - 85,707,400
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Epha5
Downstream gene
Cenpc1
,
LOC100039521
,
AI586015
,
Ube1l2
,
Gnrhr
,
Tmprss11c
Link
Open Mouse BAC browser
Click to get alignment info.
name
Epha5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13839
MGI:99654
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cenpc1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12617
MGI:99700
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100039521
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039521
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
pseudo
: _no_value
name
AI586015
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:56792
MGI:1926193
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ube1l2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:231380
MGI:1913894
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gnrhr
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14715
MGI:95790
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Tmprss11c
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:435845
MGI:3521861
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Epha5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:111154064
GeneID:13839
MGI:99654
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Eph receptor A5
transcript_id
: NM_007937.2
name
Cenpc1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802028
GeneID:12617
MGI:99700
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: centromere protein C1
transcript_id
: NM_007683.2
name
AI586015
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142385057
GeneID:56792
MGI:1926193
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: expressed sequence AI586015
transcript_id
: NM_019992.3
name
Ube1l2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:40254245
GeneID:231380
MGI:1913894
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ubiquitin-activating enzyme E1-like 2
transcript_id
: NM_172712.2
name
Gnrhr
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6754031
GeneID:14715
MGI:95790
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gonadotropin releasing hormone receptor
transcript_id
: NM_010323.1
name
Tmprss11c
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:100815530
GeneID:435845
MGI:3521861
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane protease, serine 11c
transcript_id
: NM_001030297.2
name
Epha5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:111154065
CCDS:CCDS19376.1
GeneID:13839
MGI:99654
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0005003 - ephrin receptor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA]
codon_start
: 1
note
: eck-like sequence 1
product
: Eph receptor A5
protein_id
: NP_031963.2
name
Cenpc1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6671740
GeneID:12617
MGI:99700
definition
GO_component
: GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
function
: centromeric protein
product
: centromere autoantigen C1
protein_id
: NP_031709.1
name
AI586015
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:9910568
CCDS:CCDS19377.1
GeneID:56792
MGI:1926193
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0005070 - SH3/SH2 adaptor activity [Evidence IDA]
GO_process
: GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0030099 - myeloid cell differentiation [Evidence TAS]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IDA]
codon_start
: 1
note
: stem cell adaptor protein STAP-1
product
: BCR downstream signaling 1
protein_id
: NP_064376.1
name
Ube1l2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370032
CCDS:CCDS19378.1
GeneID:231380
MGI:1913894
definition
codon_start
: 1
product
: ubiquitin-activating enzyme E1-like 2
protein_id
: NP_766300.1
name
Gnrhr
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754032
CCDS:CCDS19379.1
GeneID:14715
MGI:95790
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
product
: gonadotropin releasing hormone receptor
protein_id
: NP_034453.1
name
Tmprss11c
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71892422
CCDS:CCDS19380.1
GeneID:435845
MGI:3521861
definition
GO_function
: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO_process
: GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
note
: neurobin
product
: transmembrane protease, serine 11c
protein_id
: NP_001025468.1
name
LOC100039521
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149253987
GeneID:100039521
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: similar to RNA polymerase I associated factor (Paf53)
pseudo
: _no_value
transcript_id
: XR_031063.1
clone name
MSMg01-132A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416K17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-289C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059J12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116K14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526O11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522J08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-476E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507L06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183M09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340L12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-157A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-213D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-047P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455L02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-164M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-365L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-213M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-268N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452O08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-164L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-499M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316C17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046O06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-137J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-090P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-484O04
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-189M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-110E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-166N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386J07
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-330N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-153J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420A20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-321J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-172J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-185G24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-547K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050H06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050H08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-321A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-427H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-473J11
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-304D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068N18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-454J02
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-068E23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-353A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-186D02
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-411B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-175B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092C12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-399B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-197D12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-124H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412M03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-297I18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-010G02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-289C22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-202J24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-005N23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126L21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-237E19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212A07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-053H02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302M17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-286A20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203H06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-103M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-243N16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323M13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-021L17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-294K16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-129B09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-016F08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-224N17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-309N08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321E17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318P07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-046M19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-329N08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-169E20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-074H22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-288L02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-230G24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-134M05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-274A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-250C23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160K03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091K11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-347K09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-111O20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-010A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-141I23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-307J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-027P07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-172B02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031B16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-249G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-206F01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-207G14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166I20
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doublet
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B6Ng01-084H12
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doublet
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unique
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B6Ng01-204E06
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doublet
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B6Ng01-108O12
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B6Ng01-268G03
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B6Ng01-185F18
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doublet
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clone name
B6Ng01-177F10
singlet/doublet
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B6Ng01-020N07
singlet/doublet
doublet
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unique
clone name
B6Ng01-074J24
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B6Ng01-325O22
singlet/doublet
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clone name
B6Ng01-296N01
singlet/doublet
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B6Ng01-038E02
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doublet
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clone name
B6Ng01-166E14
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B6Ng01-093O23
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doublet
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B6Ng01-286H12
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doublet
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clone name
B6Ng01-263D23
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B6Ng01-344K08
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doublet
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B6Ng01-265P12
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B6Ng01-330M08
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B6Ng01-118O19
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B6Ng01-087J21
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B6Ng01-294K12
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B6Ng01-067B23
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B6Ng01-315M11
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B6Ng01-298G01
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B6Ng01-023H20
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B6Ng01-199E19
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B6Ng01-295F23
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B6Ng01-160A09
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B6Ng01-037A08
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B6Ng01-188H18
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B6Ng01-342D03
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B6Ng01-045E24
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B6Ng01-014F14
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B6Ng01-087A10
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B6Ng01-169L03
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B6Ng01-261C05
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B6Ng01-191L22
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B6Ng01-033C12
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B6Ng01-346C09
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B6Ng01-087J07
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B6Ng01-152B13
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B6Ng01-197P01
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B6Ng01-220O14
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B6Ng01-011A16
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B6Ng01-296F21
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B6Ng01-153E14
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B6Ng01-239E10
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