BAC Information

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BAC

Clone NameMSMg01-046O06
Chromosome5 (Build37)
Map Location 85,608,561 - 85,707,400
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046O06.T7 (MSMg01no046_o06.b1)MSMg01-046O06.TJ (MSMg01no046_o06.g1)
ACCAG277157AG277158
length694695
length of high quality
(start - end)		492 (43 - 534)521 (74 - 594)
definitionCHROMAT_FILE: MSMg01no046_o06.b1 PHD_FILE: MSMg01no046_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:08 2005CHROMAT_FILE: MSMg01no046_o06.g1 PHD_FILE: MSMg01no046_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,608,561 - 85,609,048)(85,706,880 - 85,707,400)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAATTTTATATGCAAAGAGATATTTTACACTCTATACCCCCATTTCTT
TTGAAAATGAGAATATCTTGCACTGCAAAGACCATGTGTAGCCTCCACCA
CAATCAGCGGGAACCCTGATAAACCAACTGAGTTTGTCTGTATCTATCCT
TGGTAATCTATATCAATTCTTGGAAGCATATAAGGGAGATTTCCAAGAAA
GGAAACTAGATTGTACTTGAAACTAGATTGGCCATAACTATGCTTCTGTT
AAACACCCAACTTTCCCCATAATTCCTACACAGAATATATTACTCATTTA
CTGTGCTTGTTTGTCACACTGATACGGTTTAGGGGCATTTTAAATAAGAT
CAATTGAGGGGTATTCAGACCAACACAGTCTAATTTCCCATTTAGCTCTA
AAAAGTGAGATTCATGATTGCCCACTTCTTATCCTCCCTCAGTTCCAAGA
TGCTGTTGCCACTTCATAGAGAGAATGGTCAGAACAAAAGTTAGAAATTA
GATAGGCTGTTTTAGGGCTTCTTAGATCCTAAGAAGAGTAAGCAGTTTAT
TTCTTCACTAAAGCAAAAAAAGTCATTGGTCCTTCTCACAAGCAATGCCA
TTTCCAGAGGTCATTGAAGCAAGAAGTGTTTGAAGTTGTTTTCT

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGGAATGACATATGGAAGATTTGGAG
AGAGAAAGGAAAAGTAAGAAATATTATAATTATATTATAATAACAAAACT
AAAATTAAAATACACAGTAATTTTATGTATTAATTATTTGACCTGTTTAT
AAATTTAACAAATAAGCAATCTGTGCTGCTCTGGATTTTGCTTTTTGCTA
AGTGGTCTTGTCCAAGAGAGAAAAGAAAGCATTTGTTGACTGATGGTCTT
TATTATAGAACAGGAAATAGTCAAATAAAAGAAATACACACTACTTTAAC
TAGGAAGGGATAATTTTATATAAGATCATTTTAGGTGAGTTTATGAGAGT
GTTTTATTTAGAAACTGAATTAATGGTAAATCTCAATTCAGTTTGTATGT
GAAAGGTAAAAGTCATGTTAACATAAGAAGAATTTTCATGTGTAACATAA
ACACTTTACTTTGAGATAAATTATTCTAATATATTTCACAATGTTATTTT
AAATTCTAATGTTATCATAAAGAGCAATAATTGGAATTTCATAGTAATGG
TAGAGTTCCTCAATGCAGAGATTTATATATACAGGAAGGGTGGTGTTATT
TTAGTTCTAGAAAAAGAAATTTAAAACATTTAAACATGTCCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_o06.b1 MSMg01no046_o06.b1 CHROMAT_FILE:
MSMg01no046_o06.b1 PHD_FILE: MSMg01no046_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:08 2005
         (492 letters)



>mm_chr5_85608357_85609248
          Length = 892

 Score =  859 bits (444), Expect = 0.0
 Identities = 477/488 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaattttatatgcaaagagatattttacactctatacccccatttcttttgaaa 64
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaattttaaatggaaagagatattttacactctatacccccatttcttttgaaa 264

                                                                       
Query: 65  atgagaatatcttgcactgcaaagaccatgtgtagcctccaccacaatcagcgggaaccc 124
           ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 265 atgagaatatcttgcgctgcaaagaccatgtgtagcctccaccacaattagtgggaaccc 324

                                                                       
Query: 125 tgataaaccaactgagtttgtctgtatctatccttggtaatctatatcaattcttggaag 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 tgataaaccaactgagtttgtctgtatctatacttggtaatctatatcaattcttggaag 384

                                                                       
Query: 185 catataagggagatttccaagaaaggaaactagattgtacttgaaactagattggccata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catataagggagatttccaagaaaggaaactagattgtacttgaaactagattggccata 444

                                                                       
Query: 245 actatgcttctgttaaacacccaactttccccataattcctacacagaatatattactca 304
            |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 tctatgcttctgttaaacacctaactttccccataattcctacacaggatatattactca 504

                                                                       
Query: 305 tttactgtgcttgtttgtcacactgatacggtttaggggcattttaaataagatcaattg 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 tttactgtgcttgtttgtcacactgatacggtttagggacattttaaataagatcaattg 564

                                                                       
Query: 365 aggggtattcagaccaacacagtctaatttcccatttagctctaaaaagtgagattcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggggtattcagaccaacacagtctaatttcccatttagctctaaaaagtgagattcatg 624

                                                                       
Query: 425 attgcccacttcttatcctccctcagttccaagatgctgttgccacttcatagagagaat 484
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 attgcccacttcttatcctcccccagttccaagatgctgttgccacttcatagagagaat 684

                   
Query: 485 ggtcagaa 492
           ||||||||
Sbjct: 685 ggtcagaa 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_o06.g1 MSMg01no046_o06.g1 CHROMAT_FILE:
MSMg01no046_o06.g1 PHD_FILE: MSMg01no046_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:09 2005
         (521 letters)



>mm_chr5_85706591_85707511
          Length = 921

 Score = 1000 bits (517), Expect = 0.0
 Identities = 520/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggaatgacatatggaagatttggagagagaaaggaaaagtaagaaatattataattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agggaatgacatatggaagatttggagagagaaaggaaaagtaagaaatattataattat 751

                                                                       
Query: 61  attataataacaaaactaaaattaaaatacacagtaattttatgtattaattatttgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 attataataacaaaactaaaattaaaatacacagtaattttatgtattaattatttgacc 691

                                                                       
Query: 121 tgtttataaatttaacaaataagcaatctgtgctgctctggattttgctttttgctaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgtttataaatttaacaaataagcaatctgtgctgctctggattttgctttttgctaagt 631

                                                                       
Query: 181 ggtcttgtccaagagagaaaagaaagcatttgttgactgatggtctttattatagaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggtcttgtccaagagagaaaagaaagcatttgttgactgatggtctttattatagaacag 571

                                                                       
Query: 241 gaaatagtcaaataaaagaaatacacactactttaactaggaagggataattttatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaaatagtcaaataaaagaaatacacactactttaactaggaagggataattttatataa 511

                                                                       
Query: 301 gatcattttaggtgagtttatgagagtgttttatttagaaactgaattaatggtaaatct 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 510 gatcattttaggtgagtttatgagggtgttttatttagaaactgaattaatggtaaatct 451

                                                                       
Query: 361 caattcagtttgtatgtgaaaggtaaaagtcatgttaacataagaagaattttcatgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caattcagtttgtatgtgaaaggtaaaagtcatgttaacataagaagaattttcatgtgt 391

                                                                       
Query: 421 aacataaacactttactttgagataaattattctaatatatttcacaatgttattttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aacataaacactttactttgagataaattattctaatatatttcacaatgttattttaaa 331

                                                    
Query: 481 ttctaatgttatcataaagagcaataattggaatttcatag 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttctaatgttatcataaagagcaataattggaatttcatag 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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