Query= MSMg01no047_a04.b1 MSMg01no047_a04.b1 CHROMAT_FILE:
MSMg01no047_a04.b1 PHD_FILE: MSMg01no047_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:17 2005
(579 letters)
>mm_chr5_5167517_5168495
Length = 979
Score = 839 bits (434), Expect = 0.0
Identities = 446/450 (99%)
Strand = Plus / Minus
Query: 4 ggaattcagagtcagtacgcccgagctatgtcacatggtgtcacaggatccacttttatt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggaattcagagtcagtaggcccgagctatgtcacatggtgtcacaggatccacttttatt 391
Query: 64 ttaagtctcactcatgttctttaaagatgatgtgctggcaacttttgttatcattggaaa 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 390 ttaagtctcactcatgttctttaaagatgaggtgctggcaacttttgttatcattggaaa 331
Query: 124 ccacccctgtgctagcaatggggaagtcatttaccaaatgtttcatatgacatgaaaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccacccctgtgctagcaatggggaagtcatttaccaaatgtttcatatgacatgaaaaat 271
Query: 184 gtaagagtcctgagttgcatcttggaaacatattggcaagccacattcctcattttaatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtaagagtcctgagttgcatcttggaaacatattggcaagccacattcctcattttaatg 211
Query: 244 atgtctgtcaattattagcttgacaggatctagaattactaggtgctttggactgtggga 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 210 atgtctgtcaattattagcttgacagaatctagaattactaggtgctttggactgtggga 151
Query: 304 aattatgttgattaggttaattatgttaggaaggctccaccatgtatgacaaccattcct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aattatgttgattaggttaattatgttaggaaggctccaccatgtatgacaaccattcct 91
Query: 364 gggctgagatcctagactctatgaaaaagggacagtgagcaaaaagccaagagtacatgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gggctgagatcctagactctatgaaaaagggacagtgagcaaaaagccaagagtacatgc 31
Query: 424 attcatttctttttgcttctttactgtgga 453
||||||||||||||||||||||| ||||||
Sbjct: 30 attcatttctttttgcttctttaatgtgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_a04.g1 MSMg01no047_a04.g1 CHROMAT_FILE:
MSMg01no047_a04.g1 PHD_FILE: MSMg01no047_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:17 2005
(595 letters)
>mm_chr5_5013330_5014323
Length = 994
Score = 1104 bits (571), Expect = 0.0
Identities = 589/595 (98%), Gaps = 1/595 (0%)
Strand = Plus / Plus
Query: 1 ttttttgctggaattgccaagcagcaacaaaagtcctttcattcacatgaaggcactgat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttgctggaattgccaagcagcaa-aaaagtcctttcattcacatgaaggcactgat 259
Query: 61 ctgtctcccctccccccattagttcctgctccttcagcagacagagtaagttgacagcac 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 260 ctgtctcccctccccccattagttcccgctccttcagcagacagagtaagttgacagcac 319
Query: 121 tgagtggtttgctgagagcaaatctatctacttatgcactacacttaagaagtgatgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgagtggtttgctgagagcaaatctatctacttatgcactacacttaagaagtgatgttg 379
Query: 181 tacatggggcagtgtcttctttgtggcttcccctggcccctgagaatttgaatgtatata 240
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 tacatggggcagtgtctcctttgtggcttcccccggcccctgagaatttgaatgtatata 439
Query: 241 atgactatctactgagtctaaattcttctttaagaaaacatgggcaatcctggaaacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgactatctactgagtctaaattcttctttaagaaaacatgggcaatcctggaaacatg 499
Query: 301 gctcatggtgtttacatgcatgaagacctgagttcaaattcccagcatgcacacatacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctcatggtgtttacatgcatgaagacctgagttcaaattcccagcatgcacacatacaa 559
Query: 361 acttgggcgtggtgatgcccacctgtaatcctaacactgtggtggctgagatggacaaga 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acttgggtgtggtgatgcccacctgtaatcctaacactgtggtggctgagatggacaaga 619
Query: 421 gaggaggatcgctggggcttgctggtcaccagcctagctccaggtcatgtgaccatttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaggaggatcgctggggcttgctggtcaccagcctagctccaggtcatgtgaccatttga 679
Query: 481 agggggtaagacaaagacgattgaacaggtcacctgatatcttcctccagtctccatgtg 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 agggggtaagacaaagacgattcaacaggtcacctgatatcttcctccagtctccatgtg 739
Query: 541 aaggcacaccagcctgtgtacttgcatacacacatgcatacaccacatgaatata 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaggcacaccagcctgtgtacttgcatacacacatgcatacaccacatgaatata 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
