This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-048F01
Chromosome
5 (Build37)
Map Location
70,695,418 - 70,708,772
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Kctd8
,
LOC545756
,
Yipf7
,
Guf1
,
Gnpda2
Downstream gene
Gabrg1
,
Gabra2
,
LOC635092
Link
Open Mouse BAC browser
Click to get alignment info.
name
Kctd8
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:243043
MGI:2443804
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC545756
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:545756
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 66 ESTs, 12 Proteins
pseudo
: _no_value
name
Yipf7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75581
MGI:1922831
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Guf1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:231279
MGI:2140726
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gnpda2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67980
MGI:1915230
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gabrg1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14405
MGI:103156
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gabra2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14395
MGI:95614
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC635092
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:635092
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
name
Kctd8
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:65301476
GeneID:243043
MGI:2443804
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: potassium channel tetramerisation domain containing 8
transcript_id
: NM_175519.4
name
Yipf7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130606
GeneID:75581
MGI:1922831
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Yip1 domain family, member 7
transcript_id
: NM_023784.4
name
Guf1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:91064874
GeneID:231279
MGI:2140726
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: GUF1 GTPase homolog (S. cerevisiae)
transcript_id
: NM_172711.2
name
Gnpda2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:83999998
GeneID:67980
MGI:1915230
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: glucosamine-6-phosphate deaminase 2
transcript_id
: NM_001038015.1
name
Gabrg1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801939
GeneID:14405
MGI:103156
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 1
transcript_id
: NM_010252.4
name
Gabra2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142353792
GeneID:14395
MGI:95614
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 2
transcript_id
: NM_008066.3
name
LOC635092
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149253929
GeneID:635092
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
product
: similar to Ubtf protein
transcript_id
: XM_001477578.1
name
Kctd8
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:65301477
CCDS:CCDS19320.1
GeneID:243043
MGI:2443804
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA]
GO_function
: GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA]
GO_process
: GO:0006813 - potassium ion transport [Evidence IEA]
codon_start
: 1
product
: potassium channel tetramerisation domain containing 8
protein_id
: NP_780728.3
name
Yipf7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12963821
CCDS:CCDS19321.1
GeneID:75581
MGI:1922831
definition
codon_start
: 1
product
: Yip1 domain family, member 7
protein_id
: NP_076273.1
name
Guf1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370038
CCDS:CCDS19322.1
GeneID:231279
MGI:2140726
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA]
GO_process
: GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO:0006413 - translational initiation [Evidence IEA]
codon_start
: 1
product
: GUF1 GTPase homolog
protein_id
: NP_766299.1
name
Gnpda2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83999999
CCDS:CCDS19324.1
GeneID:67980
MGI:1915230
definition
EC_number
: 5.3.1.10
GO_function
: GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA] [Evidence ISS]; GO:0016853 - isomerase activity [Evidence IEA]
GO_process
: GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006044 - N-acetylglucosamine metabolism [Evidence IEA]
codon_start
: 1
note
: oscillin; glucosamine-6-phosphate isomerase
product
: glucosamine-6-phosphate deaminase 2
protein_id
: NP_001033104.1
name
Gabrg1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31542878
CCDS:CCDS19326.1
GeneID:14405
MGI:103156
definition
GO_component
: GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA]
GO_function
: GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006821 - chloride transport [Evidence IEA]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IDA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: gamma-aminobutyric acid A receptor, gamma 1 precursor
protein_id
: NP_034382.2
name
Gabra2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6679901
CCDS:CCDS19327.1
GeneID:14395
MGI:95614
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA]
GO_function
: GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006821 - chloride transport [Evidence IEA]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 2
protein_id
: NP_032092.1
name
LOC635092
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149253930
GeneID:635092
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001477628.1
name
LOC545756
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149253949
GeneID:545756
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 66 ESTs, 12 Proteins
product
: similar to UMP-CMP kinase
pseudo
: _no_value
transcript_id
: XR_033911.1
clone name
MSMg01-065M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-374E14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-511F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379A04
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-383J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-339D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-265M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-378P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-316P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231D21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-272J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-184F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-202N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090O13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-446A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-184G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-421M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372H03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-497C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-160J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096O14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108N01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417J06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513H08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-102D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154P09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-381O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-137E22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116N03
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-546P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-206J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-418J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-051B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-203L05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412I10
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-529F14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-311C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492C16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197A21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-309J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351F09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-203C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-380A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-375G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-489B07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-245K13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-240K21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001D20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-147C04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-246N19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-232I01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-214L04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281L15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-138O02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-100O08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-204E22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-036J07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-195H03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-164F03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-003B19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060F01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-052J10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-266N16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062E21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-333M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-306H01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-255G11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-035O09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-286F22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-233H24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-224D01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-330M11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-207B08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-205G05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-209N20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346D23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-109O06
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