BAC Information

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BAC

Clone NameMSMg01-048F09
Chromosome5 (Build37)
Map Location 70,425,002 - 70,425,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048F09.T7 (MSMg01no048_f09.b1)MSMg01-048F09.TJ (MSMg01no048_f09.g1)
ACCAG278128AG278129
length1,2141,249
length of high quality
(start - end)		605 (74 - 678)790 (80 - 869)
definitionCHROMAT_FILE: MSMg01no048_f09.b1 PHD_FILE: MSMg01no048_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:09 2005CHROMAT_FILE: MSMg01no048_f09.g1 PHD_FILE: MSMg01no048_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGCATTGGGCCTATAGACTCCTATGGGAGAGGATCCGCGGAATTC
TTGATCTTTCCAGACCCTTTTCATGAATGGGTGTTGGATTTTGTGAAATG
CTTTCTCATCATCTAATGAGATGGTCTTGTGGATTTCTTTTTGAGTTTTT
TATATAGTAGATAATGTTAATGGATTTCCATATATTAAACCATCCCTGCA
TGCCTGGGATGAAGCCTACTTGATCATGATGAATGAACGTTATGATGTAG
CCTTGGATTCATTTGTGAGCATTTTATTGAGTATTTTTGCAATGATATTC
ATAAGAGAAATTGGTCTGAACTTCTATTTCTTTGTTGGTCTTCATATGGT
ATAGGTATCAGCGTATATGTTGCTTCATAGAATGAATTGGGTAGAGTACC
TTCTGTTTCTATTTTGTGAAATAGTTTGAGGAAAGTTGGAATTAGGTCTT
CTTTGAAGGTTTGATAGAACTCTGCACTAAACCCATCAATCCTGGCCTTT
TTTTTTTTTTTTTTTTCTTTTTGGATGGGAGACTATTAATGACTGCTTCT
ATTCCTTTAGTGGATATGGGACTGTTTATGTCATTAATCTCATCCTGATT
TAACTTTGGTACCTGGTATCTGTTGTTATGTCTCCCTTTTCATTTCTACT
TTTGTTAATTAGGATACTGTCCCTGTTCCTTCTCTTTGGTCTGGCCAAGG
GTTTATCTATCTTGTTGATCTTCTCAAAGAACCATCTCCTGGTTTGCTTG
ATTTCTTATATATATTTATTTTTCTTCTCTCTTTTTTTCTTTACTCTTTT
TTTTTTTTTTATTTTTTACTTTTTCTATTCTTTTTTTGTTTTTTTCTTTG
TTTTTTTTTCTCTTTTTTCTTTATTTTCCTATTTTTCTTTTTTTTCTTTT
CTTTTTTTTATTTTTATTTACTTTATTCTTTAAATTTTTTTTTTTTTTTT
TTCTTTTTTTTATTTTCATTTTCTTTATTTTCATATTTTTTTTCTTTATA
TTTCTTTTTATTTTTTTTATCTTTTTTTTTTCCTCTTTTTTTTTTATTTT
TTTTTATTTCTTTTTTCTTTTCTATCTTTTTTTTTTTTTTTTTTTTCTCT
TTCTTTTTATTTTTATTCTTTTTCTTCTTCTTTTTTTATTTAATTTTTCT
TCTTATTTTCATCTCTTTTTTCTATTTCTTTACCTTTTCATTTTTATTTA
TTTTTATCTATTTT

NGGTATTAANNNNNTTAGCATGGAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTACAGGTAGAAATTTA
TATATATGAAAAAGAAAATGAAGACTTAGAGAAACCCTGCATGTGGGTAC
TACCACCTAATGGGCTGAGGGTCCAGATAAAATCAGGAGGAGGCGGCAGG
GCAAGTGAAGAAGAAAGGAATATTCTCACTTACTATGTATGTATGCTGGT
TGATGTGAGGTAAGAAAAGTTTCTCACCCATATCTGTCCATCAAATTACT
TCTGCCTTGCCATAATCCAAGACAATGAAACTCCCTAATCATGAACTTTC
CTGAGATAAATGTTTTCTTCATGCACACAGTTTATTTCAGATCATGTTGT
AAAAATCTATTTTATGCATATTATTTATCTCTACTATTTCTCTTATGTGT
TAACACTATGTCACAGATGAGAAACTACGTCTTATCGAATATTAGGTAAG
ACAAATAGGATAAGTTCTCATTTGGATGGATGCTTTTCAAGGCTCCCCTA
TTTCTTATTTGTTATATACATATATATCAGTTTAAATTTCTGATTAAAAA
TTCTATGAAAGANGCGTTTTCTATTGACTCCAACATAAGAAGTAATCTGC
TAATGTATTACTCATATAAAATATAACATTAAGTAAAATGTAATCAAAGC
AAGGCAAGGTAAAATCCAGATGTCACCTCAAAAACAAAATGGCAGTGTGA
AAATGTCTTTTCAGGAGTTACAATGAAGAANATGTTACACAAACTTGCCT
TACTTGACATGCAGGACATCTCAAGACTGACTAATACTGGTTATACTGTT
TTGAATCAGTCCCTGAGCTAAACAAAGAGGAATTCCTCTACAAAATTCCT
TTTATCTCTTATTTTCTACTGGCTAAGTTTACTCCCATGGAAACAGACTT
ACCCTCACATGCACTTCCCACTGGATGGCCCCTTAGACGTTTGTTCTCAT
GTTTATGCCACACACTCTTTGGTACTGTTTTTCTCTGGAATATGAAAGAA
GGCATGGTATTTTGGAAAAGAAACAAAACCTTGGTGGGTTGCCAAGAAAT
TGTTGGCCCCCGCAAGGGATTTTTCCCGGTGGGAGAGCATCTTCTTTTGG
GGGGAGGGGCCCCCTCAATGGTTTTTGCCAGTTGGGGAATCTTTTTTGGA
AAACTTCCCCTTCCCCGGGGGGCGGGGTCCTTTCCTAAAAGCTCTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_f09.g1 MSMg01no048_f09.g1 CHROMAT_FILE:
MSMg01no048_f09.g1 PHD_FILE: MSMg01no048_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:09 2005
         (790 letters)



>mm_chr5_70424801_70425990
          Length = 1190

 Score = 1475 bits (763), Expect = 0.0
 Identities = 782/789 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctctacaggtagaaatttatatatatgaaaaagaaaatgaagacttagagaaaccctgc 61
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 tctctacaggtagaaatttatatatatgaaaaagaaaatgaagacttagataaaccctgc 261

                                                                       
Query: 62  atgtgggtactaccacctaatgggctgagggtccagataaaatcaggaggaggcggcagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgtgggtactaccacctaatgggctgagggtccagataaaatcaggaggaggcggcagg 321

                                                                       
Query: 122 gcaagtgaagaagaaaggaatattctcacttactatgtatgtatgctggttgatgtgagg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaagtgaagaagaaaggaatattctcacttactatgtatgtatgctggttgatgtgagg 381

                                                                       
Query: 182 taagaaaagtttctcacccatatctgtccatcaaattacttctgccttgccataatccaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taagaaaagtttctcacccatatctgtccatcaaattacttctgccttgccataatccaa 441

                                                                       
Query: 242 gacaatgaaactccctaatcatgaactttcctgagataaatgttttcttcatgcacacag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gacaatgaaactccctaatcatgaactttcctgagataaatgttttcttcatgcacacag 501

                                                                       
Query: 302 tttatttcagatcatgttgtaaaaatctattttatgcatattatttatctctactatttc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttatttcagatcatgttgtaaaaatctattttatgcatattatttatctctactatttc 561

                                                                       
Query: 362 tcttatgtgttaacactatgtcacagatgagaaactacgtcttatcgaatattaggtaag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcttatgtgttaacactatgtcacagatgagaaactacgtcttatcgaatattaggtaag 621

                                                                       
Query: 422 acaaataggataagttctcatttggatggatgcttttcaaggctcccctatttcttattt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acaaataggataagttctcatttggatggatgcttttcaaggctcccctatttcttattt 681

                                                                       
Query: 482 gttatatacatatatatcagtttaaatttctgattaaaaattctatgaaagangcgtttt 541
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 682 gttatatacatatttatcagtttaaatttctgattaaaaattctatgaaagatgggtttt 741

                                                                       
Query: 542 ctattgactccaacataagaagtaatctgctaatgtattactcatataaaatataacatt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctattgactccaacataagaagtaatctgctaatgtattactcatataaaatataacatt 801

                                                                       
Query: 602 aagtaaaatgtaatcaaagcaaggcaaggtaaaatccagatgtcacctcaaaaacaaaat 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aagtaaaatgtaatcaaagcaaggcaaggtaaaatccagatgtcacctcaaaaacaaaat 861

                                                                       
Query: 662 ggcagtgtgaaaatgtcttttcaggagttacaatgaagaanatgttacacaaacttgcct 721
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 862 ggcagtgtgaaaatgtcttttcaggagttacaatgaagaaaatgttacacaaacttgcct 921

                                                                       
Query: 722 tacttgacatgcaggacatctcaagactgactaatactggttatactgttttgaatcagt 781
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 922 tacttgacatgcaggacatctcaagactgactaatactggtaatactgttttgaatcagt 981

                    
Query: 782 ccctgagct 790
           ||| |||||
Sbjct: 982 ccccgagct 990


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 790
Length of database: 1190
Length adjustment: 10
Effective length of query: 780
Effective length of database: 1180
Effective search space:   920400
Effective search space used:   920400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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