Query= MSMg01no048_n19.b1 MSMg01no048_n19.b1 CHROMAT_FILE:
MSMg01no048_n19.b1 PHD_FILE: MSMg01no048_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:15 2005
(740 letters)
>mm_chr5_59723244_59724383
Length = 1140
Score = 1114 bits (576), Expect = 0.0
Identities = 591/596 (99%)
Strand = Plus / Minus
Query: 145 tattgtgaattattattgaccacaaggaagactggtatctccatatgcttattatcaaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 tattgtgaattattattgaccacaaggaagactggtatctccatatgcttattatcaaat 1081
Query: 205 ccttaatggaaaacgacaggagctcactggccagccagcatagcaaaatcatacactttc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 ccttaatggaaaacgacaggagctcactggccagccagcatagcaaaatcatacactttc 1021
Query: 265 atttcagtgagcgatgctttgtaaatacaaagaatgagaatgaaagtaataaaggaacta 324
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1020 atttcagtgagcgatgctttgtaaatacaaagaatgagaatgaaattaataaaggaacta 961
Query: 325 atgtgacatttttggcctccgtaattagcatacccaattttgtatgtatacacactcaca 384
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 960 atgtgacatttttggcctccgtaattagcatacccaattttgtatgtatatacactcaca 901
Query: 385 tttgcatatgcacactacacgcaaataatatacacaacccacatgcgtgtctgtgcatct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tttgcatatgcacactacacgcaaataatatacacaacccacatgcgtgtctgtgcatct 841
Query: 445 attttaaatatggcaaaacactttcatagtacagtaagtgagttttcagtgtacagacta 504
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 840 attttaaatgtggcaaaacactttcatagtacagtaagtgagttttcagtgtaaagacta 781
Query: 505 ctttcactccttctagcatcatataatacaatttctgaaattggccaaatagtacaactg 564
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 780 ctttcactccttctagcatcatacaatacaatttctgaaattggccaaatagtacaactg 721
Query: 565 ttgtgatacagtgtctaacagtcagactggagtggaacttactggccttcaggtcaggca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ttgtgatacagtgtctaacagtcagactggagtggaacttactggccttcaggtcaggca 661
Query: 625 cctcacatctcagcttctagaattttggggtaacacagtgcctcacattgaactcattca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cctcacatctcagcttctagaattttggggtaacacagtgcctcacattgaactcattca 601
Query: 685 tcttatgcaaacagaaaagtactagattgttagagttgtgttatataatgagttta 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tcttatgcaaacagaaaagtactagattgttagagttgtgttatataatgagttta 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1140
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1130
Effective search space: 824900
Effective search space used: 824900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_n19.g1 MSMg01no048_n19.g1 CHROMAT_FILE:
MSMg01no048_n19.g1 PHD_FILE: MSMg01no048_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:16 2005
(713 letters)
>mm_chr5_59570241_59571348
Length = 1108
Score = 934 bits (483), Expect = 0.0
Identities = 511/523 (97%), Gaps = 5/523 (0%)
Strand = Plus / Plus
Query: 187 aaaatatatatttgaaacactgactccaaggaacagtgcagatttcttttttaataggaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaaatatatatttgaaacactgactccaaggaacagtgcagatttcttttttaataggaa 446
Query: 247 aaaatatatcttagcctcattgaaatgatgaattttaaccttattattcaaatttccatt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaatatatcttagcctcattgaaatgatgaattttaaccttattattcaaatttccatt 506
Query: 307 tgttagtattttctattcctagttaaaggccagggatgatcagtttccaagaccataaat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgttagtattttctattcctagttaaaggccagggatgatcagtttccaagaccataaat 566
Query: 367 taaaaccactgagaaattttggatttaaactacgagaagtatacatttttattttttgtc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taaaaccactgagaaattttggatttaaactacgagaagtatacatttttattttttgtc 626
Query: 427 cattggccacaaacttcttatgtatatgtagttaaaaatctgaattttgctttgttctat 486
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 627 cattggccacaagcttcttatgta-----agttaaaaatctgaattttgctttgttctat 681
Query: 487 actttagttgagaagtagttattaagaaatgatccaataggaagataattaattttctct 546
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 682 actttagttgagaagtagttattaagaaatgattgaataggaaggtaattaattttctct 741
Query: 547 aaaacaattctgcctatacatactaagaatatacatattaattaaaatagggacccaagt 606
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 742 aaaacaattctgcctataaatactaagaatatatatattaattaaaatagggacccaagt 801
Query: 607 aatataaacgtgttctagaagccataattttaattatgctctttattctaatacacgtga 666
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aatatatacgtgttctagaagccataattttaattatgctctttattctaatacacgtga 861
Query: 667 aaaataagtcttttacttgattttatttcttgttttgtttttg 709
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 aaaataagtcttttacttgattttatttcttgttttgtttttg 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1108
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1098
Effective search space: 771894
Effective search space used: 771894
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
