BAC Information

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BAC

Clone NameMSMg01-049B03
Chromosome5 (Build37)
Map Location 14,996,189 - 14,996,969
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049B03.T7 (MSMg01no049_b03.b1)MSMg01-049B03.TJ (MSMg01no049_b03.g1)
ACCAG278661AG278662
length1,2281,237
length of high quality
(start - end)		756 (51 - 806)760 (75 - 834)
definitionCHROMAT_FILE: MSMg01no049_b03.b1 PHD_FILE: MSMg01no049_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:41 2005CHROMAT_FILE: MSMg01no049_b03.g1 PHD_FILE: MSMg01no049_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATTTTTNNNNNNNACATTGGGCGCTNXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACATCTTATTTCCATAACCCATATATGCTGTAGCATACAT
ACATACATACATACATACATACATACATACATACATACACACATACACAC
ATACACACACACACACACACATACACACATACACACATACACACATACAA
TTGGTTTGTCTGTTTAGTTTTGGATGGGTTTGAGGTGTCGTTGTTGTTGG
TTTGTTTTTGAAACAGAGTCTGTCTATGTAGCCTTGGCTGTCATGGAATT
TGCTTTGTAAACCAGGCTGGCCTCAAATTTAGAGATTCACCTTCTTCTGT
CTTCTAAGACCTAGTAGTCAAGTCTCCACGCCCAGCAGTTTGAATTGTTG
GATTAAAGATTTTGGACATTTGTCTACTTTATCTTTTCTATTAAGATAGA
AAGAAGATAGCCTATTATTCAAAATTACTCGGAAAATTATTTTATAGTCA
GTCATGGCTGGAATGCAGATATAAAAAAATCAGATTGTTTGGAACTGAAA
AAAAAAAGATAAAAAGTTTAAGAAACTCTTTAAAAGTTTCCCTTTTCAAA
ACTGGATGGCCATTCATACAGCTCATGAATCTTAACGTTTAACAATATAA
GTGAGTAGCCTCAGCTTATTTCAGTTTGTCTTAAATTTAATTTAGGTTTA
ATCATGTGTCTATAGACCTGTACTTTTATCATCGCGTTATTTTCCCTTAC
AACTTAACTGTTAACATTAATAGACCTCAAAAAAATAAATACATTTAAAT
CCGATGAGCACAAGATGTTCAGAATTGTTAGCAAACGTCTTGCTTTTGTT
ACTGTAGCTTCTAAGGCCCCAAGCACAGCCATTCTTGGGATTTCTGTTAG
CGCCGAAATGACTTAAGAATTGCCTTGCTCATCCGGTGCCTTAACCGTCA
CAAAAAAATCCAAGTGACCTGAAAAAGGAAAGGAAAGGAAACAAAAGGGA
ATCCGTTTCCGGAATGAACGCGGAACCACAAAAACCCTCAAATCCCCTCC
AAACTAGCTAAAAACCAAAAAACCCCCCCTCCACAACAAACCTCCCAAAA
TAGTGAAAGAAAAAAAAACTCTCGCCCAAACCCTGTACAAATAAAAGGGT
TCCCACAATGTGTTATCCACACAAAATTTGTCTTTTTTGGCAACCTCCGG
GTAACCCCATAAATATAAATTTTGAAAA

CATACANNNNNNAATCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCAGTCCAAATTCTCTTTTTTAACC
ACTTCATACTAATTTACTTATCTTCATAATAAGGAAGAATATGTCTTCCT
TGTGTATTTAAAATTATGAGATTAGATACTCATATTGGACAGAAGGTAAT
TGAGTTCATAAGAAGTGATACATAATAGAAAAGAACATGTTCATGGATTT
GGAGTCAGGACTATGCTGTGTATTGGTTATTGAAAATTAATATCAGAGTG
ACACAGTTGTGTGTCTTTAGGAAGATGACTGGTGGGAGACACTGATCCTA
AAATGCCTTTGTATTTTAGTCTATTTTCCTAGAAAAACATAGGAAAAAAG
AATATATTGAGGTACATCCAGGAAACAGGTCTGGAAGACATTAAATAATC
CCAGAGGAAAAGTTTCTACCAGTTGCTAAAAGTGTTTTTACAAGGTGGGA
TTAAAGATATCATTTCAAGTACAATTGGTGTGAAATGGGTGAGCGAAAGC
TTTACCTATTCACCCTCTTTCCACTTTCTCTCTACTTTGGGGTTACTCAA
AGAATCCCAAAACCTTTCCACAAAAATCTGGGTTTCTACAGAGCAGAGAT
TGGAAAACGAGTTATGAAAACACACACAGAGTTCAGTTAAGGGCCTCACT
TAGTGGAGGAAAGCAGGAAAGGTTTAGGGGAGCAGAGAAGTTATTTTTCA
GGGCCTGAGGATATAAAACCTCAGGTGTCTTGGGAGAGAACAGAATACTT
TGGTGGCATCCCAGCTGGAAAGAGATGGTGTGTGCAAATCAGGATAATAG
CAAGAAGGTTAGTGACATACAAAGATATTCTACAGAAAGTGTTAATTGAG
GCAAACTACTACTGTCCTGGAATTCCAGCAGCAGAGCTGTCACTTTTTAA
AATCATTAGACATTTCTCTTATTAAATTTCCAATGTAATCTCCTTTTCTA
ATTCCCCCACTGAAAAAGCCCCTCTTCCCATTCTTTCATCCCCTGGTTCA
CCAAATCACCCACTTCCCATTTTCCCTGTCCCGGTTTATTCCCCTAAACC
GGAAACATTTCAACCTTTATCGGGAACCAAGGCCCCCCTTCCCCTTTGAT
GGGCCCAAAAAAAACCCTCCCCTCTATTTTCTTGGGGGGGGTTGAGAACA
CTTGTTTTCCCCCCCAAGGGGAATGCTTTTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_b03.b1 MSMg01no049_b03.b1 CHROMAT_FILE:
MSMg01no049_b03.b1 PHD_FILE: MSMg01no049_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:41 2005
         (756 letters)



>mm_chr5_14996015_14997169
          Length = 1155

 Score = 1191 bits (616), Expect = 0.0
 Identities = 728/784 (92%), Gaps = 35/784 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatcttatttccataacccatatatgctgtagcatacatacatacatacatac 64
           ||||| |||||||||||||||||  |||||||||||||||||||||||||||| ||||||
Sbjct: 175 gaatttacatcttatttccataaaacatatatgctgtagcatacatacatacacacatac 234

                                                                       
Query: 65  atacatacatacataca----taca------------tacacacatacacacatacacac 108
           | ||||||| |||||||    ||||            |||||||||||||||||||||||
Sbjct: 235 acacatacacacatacacacatacacacatacacacatacacacatacacacatacacac 294

                                                                       
Query: 109 acacacacacaca------tacacaca--tacacacatacacacataca--------att 152
           |||||||||||||      ||||||||  ||||||||||||||||||||        |||
Sbjct: 295 acacacacacacacacacatacacacacatacacacatacacacatacacacaaacaatt 354

                                                                       
Query: 153 ggtttgtctgtttagttttggatgggtttgaggtgtcgttgttgttggtttgtttttgaa 212
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 355 ggtttgtctgtttagttttggatgggtttgaggtatggttgttgttggtttgtttttgaa 414

                                                                       
Query: 213 acagagtctgtctatgtagccttggctgtcatggaatttgctttgtaaaccaggctggcc 272
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acag--tctgtctatgtagccttggctgtcatggaatttgctttgtaaaccaggctggcc 472

                                                                       
Query: 273 tcaaatttagagattcaccttcttctgtcttctaagacctagtagtcaagtctccacgcc 332
           ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 473 tcaaattcagagattcactttcttctgtcttctgagacctagtagtcaagtctcctcgcc 532

                                                                       
Query: 333 cagcagtttgaattgttggattaaagattttggacatttgtctactttatcttttctatt 392
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 533 cagcagtttgaattgttggattaaagattttggacatttttctactttatcttttctatt 592

                                                                       
Query: 393 aagatagaaagaagatagcctattattcaaaattactcggaaaattattttatagtcagt 452
           ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 593 aagatagaaagaagatagcctattattcaaatttactcagaaaattattttatagtcagt 652

                                                                       
Query: 453 catggctggaatgcagatataaaaaaatcagattgtttggaactgaaaaaaaaaagataa 512
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 653 catggctggaatgcagatataaaaaaatcagattgtttggaactgaaaaaaaaa-gataa 711

                                                                       
Query: 513 aaagtttaagaaactctttaaaagtttcccttttcaaaactggatggccattcatacagc 572
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 712 aaagtttaagaaactctttaaaaatttcccttttcaaaactggctggccattcatacagc 771

                                                                       
Query: 573 tcatgaatcttaacgtttaacaatataagtgagtagcctcagcttatttcagtttgtctt 632
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tcatgaatcttaaggtttaacaatataagtgagtagcctcagcttatttcagtttgtctt 831

                                                                       
Query: 633 aaatttaatttaggtttaatcatgtgtctatagacctgtacttttatcatcgcgttattt 692
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 832 aaatttaatttaggtttaatcatgtgtctatagacctgtacttttatcatcgtgttattt 891

                                                                       
Query: 693 tcccttacaacttaactgttaacattaatagacctcaaaaaaataaatacatttaaatcc 752
           | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ttccttataacttaactgttaacattaatagacctcaaaaaaataaatacatttaaatcc 951

               
Query: 753 gatg 756
           ||||
Sbjct: 952 gatg 955


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1155
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1145
Effective search space:   854170
Effective search space used:   854170
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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