BAC Information

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BAC

Clone NameMSMg01-049E03
Chromosome5 (Build37)
Map Location 59,570,627 - 59,724,383
singlet/doubletdoublet
Overlap geneLOC100041425
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049E03.T7 (MSMg01no049_e03.b1)MSMg01-049E03.TJ (MSMg01no049_e03.g1)
ACCAG278776AG278777
length1,1751,245
length of high quality
(start - end)
730 (33 - 762)699 (89 - 787)
definitionCHROMAT_FILE: MSMg01no049_e03.b1 PHD_FILE: MSMg01no049_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:05 2005CHROMAT_FILE: MSMg01no049_e03.g1 PHD_FILE: MSMg01no049_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,723,839 - 59,724,383)(59,570,627 - 59,571,138)
sequence
NNNGGGGCATTCGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTA
AATGAAGACAGTAGTCTCCATAAGTTTTGCATCTTGTCAAGACTTACACA
ATGTGAAACCCTAAGGATCCATAAAGAGTTTGCCATTTAACTTAAAAAGA
ATAATGCGTTTGTGGCTGAGCAGACGGCATAGTGTTAAAGAGCCCTTGCT
GAACAAGAATTAGAACCTATTGTGAATTATTATTGACCACAAGGAAGACT
GGTATCTCCATATGCTTATTATCAAATCCTTAATGGAAAACGACAGGAGC
TCACTGGCCAGCCAGCATAGCAAAATCATACACTTTCATTTCAGTGAGCG
ATGCTTTGTAAATACAAAGAATGAGAATGAAAGTAATAAAGGAACTAATG
TGACATTTTTGGCCTCCGTAATTAGCATACCCAATTTTGTATGTATACAC
ACTCACATTTGCATATGCACACTACACGCAAATAATATACACAACCCACA
TGCCTGTCTGTGCATCTATTTTAAATATGGCAAAACACTTTCATAGTACA
GTAAGTGAGTTTTCAGTGTAAAGACTACTTTCACTCCTTCTAGCATCATA
TAATACAATTTCTGAAATTGGCCAAATAGTACAACTGTTGTGATACAGCG
TCTAACAGTCAGACTCGAGTGGAACTTACTGGCCTTCAGGTCAGGCACCT
CACATCTCAGCTTCTAGAATTTTGGGGTAACACAGTGCCTCACATTGAAC
TCATTCATCTTATGCAAACAGAAAAGTACTAGATTGTTAGAGTCGTGTTA
TATAATGAGTTTAAAATAATATCATACATCTAATATTTTTTACCGTGAAC
ATTTCCGGCTTTCCAAATATAACCATTCCCTAATTTTGTACAAGTTTTCC
ATTTTTACCAAATTCCCAATTATTTTCTGTAAGCTACTTGCAATTAAAAA
ACGCCATTCCAAAAATTTTCCCTGATTTNNNTNNNCCCCTTTTNNNNNTT
CNNTTTNNNTTTTCTTTTTTTCTTNNTTTTTTNTTTTTCTTTTTTTTTTT
CCCTCCTTTCCCTTTCTCTCCCTCCCCCTCTCTCTTTTTTCTCTCCTTTC
TCTCTCCTTTTCTTTTCTTTTTCCCCCTCCTCTTCCNTNTCCTCTCCTCT
CTCCTCTCTCCCCTTCTTCCCCTCT
CCATCCTTNTNNNTAACATGGNATGCTGGGGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAGGGGACAATAGTTTA
AAGTTTCAGCCACATAACACCCCAGAACTAGTGAATTTCACTTATCAGCA
CCACACTGTTCATCTTATAAATATAAGTTATTGCTGAAAGGAACAACTGA
GTTATAACTTTTTTTAGTTATTTTAGTGCATATTTCTTCACTTTCAGAGT
CAGTGGGGAAAACTAACTTTAAAATATATATTTGAAACACTGACTCCAAG
GAACAGTGCAGATTTCTTTTTTAATAGGAAAAAATATATCTTAGCCTCAT
TGAAATGATGAATTTTAACCTTATTATTCAAATTTCCATTTGTTAGTATT
TTCTATTCCTAGTTAAAGGCCAGGGATGATCAGTTTCCAAGACCATAAAT
TAAAACCACTGAGAAATTTTGGATTTAAACTACGAGAAGCATACATTTTT
ATTTTTTGTCCATTGGCCACACACTTCTTATGTATATGTAGTTAAAAATC
CGAATTTTGCTTTGTTCTATACTTTAGTTGAGAAGTAGTTATTAAGAAAT
GATTTAATAGGAAGATAATTAATTTTCTCTAAAACAATCCTGCCTATACA
TACTAAGAATATACATATTAATTAAAATAGGGACCCAAGTAATATAAACG
TGTTCTAGAAGCCATAATTTTAATTATGCTCTTTATTCTAATACACGTGA
AAAATAAGTCTTTTACTTGATTTTATTTCTTGTTTTGTTTTCGGTTGTTG
TGNGTTTTTTGNNTTTNCTTCTATTTANATATATTTTCAACTTCTATATA
TCTTTTCCCTTATCTTACTAATTAACTTCTAATTATCTAATTAATCATTT
ATTCTCTTTATCACAACTTCTCATCTCTCTTCAATANTTTCTTTCATCTC
CCTACCTATTTAAACTTTTTATTCTACTACTTTTTTTTATTTTTCACTTT
ATCCTTTATTAATTCTTTTATTTCATTTTAATTTTTAATACTATTTTATT
ACCTTATTATTCCTATATATCTTATATTCTTACTTAGCATATACTCTATA
TTATTATTCTATATTTCTTTATCTCTCTTCCTATTACTTATCTACTATTC
CATCTCCATTTTATTACTCCGCATCTTACTATTTAATAATTCCTATCTAA
CCAATCAATACTAATATATTTTTTGCACTACTTGTCACCACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_e03.b1 MSMg01no049_e03.b1 CHROMAT_FILE:
MSMg01no049_e03.b1 PHD_FILE: MSMg01no049_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:05 2005
         (730 letters)



>mm_chr5_59723254_59724383
          Length = 1130

 Score = 1000 bits (517), Expect = 0.0
 Identities = 538/545 (98%)
 Strand = Plus / Minus

                                                                        
Query: 186  tattgtgaattattattgaccacaaggaagactggtatctccatatgcttattatcaaat 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 tattgtgaattattattgaccacaaggaagactggtatctccatatgcttattatcaaat 1071

                                                                        
Query: 246  ccttaatggaaaacgacaggagctcactggccagccagcatagcaaaatcatacactttc 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ccttaatggaaaacgacaggagctcactggccagccagcatagcaaaatcatacactttc 1011

                                                                        
Query: 306  atttcagtgagcgatgctttgtaaatacaaagaatgagaatgaaagtaataaaggaacta 365
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1010 atttcagtgagcgatgctttgtaaatacaaagaatgagaatgaaattaataaaggaacta 951

                                                                        
Query: 366  atgtgacatttttggcctccgtaattagcatacccaattttgtatgtatacacactcaca 425
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 950  atgtgacatttttggcctccgtaattagcatacccaattttgtatgtatatacactcaca 891

                                                                        
Query: 426  tttgcatatgcacactacacgcaaataatatacacaacccacatgcctgtctgtgcatct 485
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 890  tttgcatatgcacactacacgcaaataatatacacaacccacatgcgtgtctgtgcatct 831

                                                                        
Query: 486  attttaaatatggcaaaacactttcatagtacagtaagtgagttttcagtgtaaagacta 545
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  attttaaatgtggcaaaacactttcatagtacagtaagtgagttttcagtgtaaagacta 771

                                                                        
Query: 546  ctttcactccttctagcatcatataatacaatttctgaaattggccaaatagtacaactg 605
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 770  ctttcactccttctagcatcatacaatacaatttctgaaattggccaaatagtacaactg 711

                                                                        
Query: 606  ttgtgatacagcgtctaacagtcagactcgagtggaacttactggccttcaggtcaggca 665
            ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 710  ttgtgatacagtgtctaacagtcagactggagtggaacttactggccttcaggtcaggca 651

                                                                        
Query: 666  cctcacatctcagcttctagaattttggggtaacacagtgcctcacattgaactcattca 725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  cctcacatctcagcttctagaattttggggtaacacagtgcctcacattgaactcattca 591

                 
Query: 726  tctta 730
            |||||
Sbjct: 590  tctta 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space:   806400
Effective search space used:   806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no049_e03.g1 MSMg01no049_e03.g1 CHROMAT_FILE:
MSMg01no049_e03.g1 PHD_FILE: MSMg01no049_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:05 2005
         (699 letters)



>mm_chr5_59570245_59571338
          Length = 1094

 Score =  901 bits (466), Expect = 0.0
 Identities = 503/518 (97%), Gaps = 7/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 183 aaaatatatatttgaaacactgactccaaggaacagtgcagatttcttttttaataggaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaatatatatttgaaacactgactccaaggaacagtgcagatttcttttttaataggaa 442

                                                                       
Query: 243 aaaatatatcttagcctcattgaaatgatgaattttaaccttattattcaaatttccatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaatatatcttagcctcattgaaatgatgaattttaaccttattattcaaatttccatt 502

                                                                       
Query: 303 tgttagtattttctattcctagttaaaggccagggatgatcagtttccaagaccataaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgttagtattttctattcctagttaaaggccagggatgatcagtttccaagaccataaat 562

                                                                       
Query: 363 taaaaccactgagaaattttggatttaaactacgagaagcatacatttttattttttgtc 422
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 taaaaccactgagaaattttggatttaaactacgagaagtatacatttttattttttgtc 622

                                                                       
Query: 423 cattggccacaca-cttcttatgtatatgtagttaaaaatccgaattttgctttgttcta 481
           ||||||||||| | |||||||||||     ||||||||||| ||||||||||||||||||
Sbjct: 623 cattggccaca-agcttcttatgta-----agttaaaaatctgaattttgctttgttcta 676

                                                                       
Query: 482 tactttagttgagaagtagttattaagaaatgatttaataggaagataattaattttctc 541
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 677 tactttagttgagaagtagttattaagaaatgattgaataggaaggtaattaattttctc 736

                                                                       
Query: 542 taaaacaatcctgcctatacatactaagaatatacatattaattaaaatagggacccaag 601
           ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 737 taaaacaattctgcctataaatactaagaatatatatattaattaaaatagggacccaag 796

                                                                       
Query: 602 taatataaacgtgttctagaagccataattttaattatgctctttattctaatacacgtg 661
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 taatatatacgtgttctagaagccataattttaattatgctctttattctaatacacgtg 856

                                                 
Query: 662 aaaaataagtcttttacttgattttatttcttgttttg 699
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaataagtcttttacttgattttatttcttgttttg 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1094
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1084
Effective search space:   746876
Effective search space used:   746876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)