Query= MSMg01no049_e03.b1 MSMg01no049_e03.b1 CHROMAT_FILE:
MSMg01no049_e03.b1 PHD_FILE: MSMg01no049_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:05 2005
(730 letters)
>mm_chr5_59723254_59724383
Length = 1130
Score = 1000 bits (517), Expect = 0.0
Identities = 538/545 (98%)
Strand = Plus / Minus
Query: 186 tattgtgaattattattgaccacaaggaagactggtatctccatatgcttattatcaaat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 tattgtgaattattattgaccacaaggaagactggtatctccatatgcttattatcaaat 1071
Query: 246 ccttaatggaaaacgacaggagctcactggccagccagcatagcaaaatcatacactttc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ccttaatggaaaacgacaggagctcactggccagccagcatagcaaaatcatacactttc 1011
Query: 306 atttcagtgagcgatgctttgtaaatacaaagaatgagaatgaaagtaataaaggaacta 365
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1010 atttcagtgagcgatgctttgtaaatacaaagaatgagaatgaaattaataaaggaacta 951
Query: 366 atgtgacatttttggcctccgtaattagcatacccaattttgtatgtatacacactcaca 425
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 950 atgtgacatttttggcctccgtaattagcatacccaattttgtatgtatatacactcaca 891
Query: 426 tttgcatatgcacactacacgcaaataatatacacaacccacatgcctgtctgtgcatct 485
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 890 tttgcatatgcacactacacgcaaataatatacacaacccacatgcgtgtctgtgcatct 831
Query: 486 attttaaatatggcaaaacactttcatagtacagtaagtgagttttcagtgtaaagacta 545
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 attttaaatgtggcaaaacactttcatagtacagtaagtgagttttcagtgtaaagacta 771
Query: 546 ctttcactccttctagcatcatataatacaatttctgaaattggccaaatagtacaactg 605
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctttcactccttctagcatcatacaatacaatttctgaaattggccaaatagtacaactg 711
Query: 606 ttgtgatacagcgtctaacagtcagactcgagtggaacttactggccttcaggtcaggca 665
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 710 ttgtgatacagtgtctaacagtcagactggagtggaacttactggccttcaggtcaggca 651
Query: 666 cctcacatctcagcttctagaattttggggtaacacagtgcctcacattgaactcattca 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cctcacatctcagcttctagaattttggggtaacacagtgcctcacattgaactcattca 591
Query: 726 tctta 730
|||||
Sbjct: 590 tctta 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space: 806400
Effective search space used: 806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_e03.g1 MSMg01no049_e03.g1 CHROMAT_FILE:
MSMg01no049_e03.g1 PHD_FILE: MSMg01no049_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:05 2005
(699 letters)
>mm_chr5_59570245_59571338
Length = 1094
Score = 901 bits (466), Expect = 0.0
Identities = 503/518 (97%), Gaps = 7/518 (1%)
Strand = Plus / Plus
Query: 183 aaaatatatatttgaaacactgactccaaggaacagtgcagatttcttttttaataggaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaatatatatttgaaacactgactccaaggaacagtgcagatttcttttttaataggaa 442
Query: 243 aaaatatatcttagcctcattgaaatgatgaattttaaccttattattcaaatttccatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaatatatcttagcctcattgaaatgatgaattttaaccttattattcaaatttccatt 502
Query: 303 tgttagtattttctattcctagttaaaggccagggatgatcagtttccaagaccataaat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgttagtattttctattcctagttaaaggccagggatgatcagtttccaagaccataaat 562
Query: 363 taaaaccactgagaaattttggatttaaactacgagaagcatacatttttattttttgtc 422
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 taaaaccactgagaaattttggatttaaactacgagaagtatacatttttattttttgtc 622
Query: 423 cattggccacaca-cttcttatgtatatgtagttaaaaatccgaattttgctttgttcta 481
||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 623 cattggccaca-agcttcttatgta-----agttaaaaatctgaattttgctttgttcta 676
Query: 482 tactttagttgagaagtagttattaagaaatgatttaataggaagataattaattttctc 541
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 677 tactttagttgagaagtagttattaagaaatgattgaataggaaggtaattaattttctc 736
Query: 542 taaaacaatcctgcctatacatactaagaatatacatattaattaaaatagggacccaag 601
||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 737 taaaacaattctgcctataaatactaagaatatatatattaattaaaatagggacccaag 796
Query: 602 taatataaacgtgttctagaagccataattttaattatgctctttattctaatacacgtg 661
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 taatatatacgtgttctagaagccataattttaattatgctctttattctaatacacgtg 856
Query: 662 aaaaataagtcttttacttgattttatttcttgttttg 699
||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaaataagtcttttacttgattttatttcttgttttg 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1094
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1084
Effective search space: 746876
Effective search space used: 746876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|