BAC Information

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BAC

Clone NameMSMg01-049H10
Chromosome5 (Build37)
Map Location 83,708,145 - 83,708,612
singlet/doubletsinglet
Overlap geneSrd5a2l2
Upstream geneEG433912, LOC100039434
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049H10.T7 (MSMg01no049_h10.b1)MSMg01-049H10.TJ (MSMg01no049_h10.g1)
ACCAG278908AG278909
length1,2721,313
length of high quality
(start - end)
597 (28 - 624)486 (72 - 557)
definitionCHROMAT_FILE: MSMg01no049_h10.b1 PHD_FILE: MSMg01no049_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:30 2005CHROMAT_FILE: MSMg01no049_h10.g1 PHD_FILE: MSMg01no049_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACAGTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTT
TGTTCAGCTCTGAGTCCTATTTTTTAATGGGGTTATTTGATTTTCTGGAG
TCCACCTTCTTGAGTAATCTACATATATTGGATATTAGTCACCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATTTGTTGGTGGTCTTTTTGTCT
TATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGTCC
CATTTGTCAATTCTTGATCTTAGAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCCTGTACCTATATCTTCGAGGCTTTTCCCTACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTCT
AGTATTGACCTTACTTAGTACAAGGAGATAGGAACGGATCAATTTGCATT
CTTCTATATGATAACTGCCAGTTTTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTTTTTCCACTGCATGGTTTTAGCTCGCTTGTCAACGATCAATTGA
CCATAGGTGTGTGGGTTCGTCTCTGGGTCTACAATTCCACTTTTAATGGC
AATGAAATGTACCACATTTCTCAAGTGACTGCAAGTACTAATATTGAATT
TTGAACTTTTCTCTTTCTCTCATAAAGCATTCTAGCTTCAACTGATGTTA
ATCCATACTATTTTAAATAGTATTACATCTAAAGTATTTTCTCCAACAAT
AATTAAGTTCTTTTTTCTTTTCTACAATTAGTGACCATGACTTATTCATA
TAAAAACGCCTCCATTCTGTATTCCTCCTTAATTAATAGCACTTTGTACC
TATATTTATTTTTTCTATAACTCTAAGATAATTTTTAATTTCTGCATTGT
AAATAACCTGTAATTTTTTACCCCATGTTTTTGCTTTCTTCCTTGTGATT
TACTTCTAAATGGTCACTAGCCCAATCTGTTCTTCCGTAAAAAGGTTTAA
TAATCATTGCTCTAATCTCATCTTAACCATTTTAATTCTCCTATACTTAA
CTTGTCTCCTCATGCTTCTTTTAACAATTAAAATATCGGCATTATTCTAT
TTTTCCCCAAATTTATTTCACACCCCTTCAACTGTTTTTTGTCTCTCTCT
AATCTTCACCTTTTATCAACCTCTTTTTTGTCTGTATATCTTTCTACCCA
CTCTTTATTTCCTTTTCTCTTCTTTATGCAACATTCTCTATTTTTCTCTT
CTATTTCTCTTCCTTTGTTATT
TTTTTATGAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCAGAAATTTTTGAGAAGGTATTATGT
AAGTTGTTTTTATAGAATTTTTTTGCTTATTTATTCTTTGAATAGATTTT
GTACCTCTAATATTTTAAGCCATAGATAAAAGGGCCTTAATAGGGAACCA
TGAAACATTTGGGAAATGTTTTCTATTAGAAATTATTTTTAGTGTTTAAA
ATAGAATTCCTTCTTTCTACAGGATTATAATATTGTGATTCTTTTGTTTT
GTTTTTTTTTTTAGTTGGTATTTTCACAATCTTAATGACCATCCAGATGT
CTCTGTGGGCACGAAAGAAGCATAAAATATATCGGAAGAAGTTCAACTCA
TATGTTCATAGGAAATCAGCCATAATTCCACTCATCTTATAAGTAAATAT
AGCTATTCTAATCTGAGCAAGAAGTGCAGAATATAAATTCACTCAAAAAG
GCTTAGGAAGTGCTTACCTATTATAATGCAACAATTGTTTAATAACAATA
TATTAATGAACTTGAAAGCAGATTTCACTAAATTTCTGTTATGGACTAGA
CGTAACAAAAAGCAGGAATTAATCTAAGCCTGAGAACTCACCTCTGATTA
CCAGCATATTGAAAGTTGAGTCAGCACGATTCCCTTGAGTGAGAGTCCAT
ACAAGTTTATGATGGATCGGCTTTATTACTATGAGAATGCAACCAATTAA
GATGATTTTATTAATACAAGCTTTAAAATTTCGTCTAATTATTTGCAAGC
ACTTGATCACCAAAATAGTCTTTTTGCTTTAATATGTCATACCATATTTG
TTCGTATTTATCTAATTAAACTGACTGTGTTTCCGGTCTTGTCCCCTTAA
TTTATGCTCTACTTTTTTCCTGTGCTTCTTTCCCAACCTTCCTTATTCTC
TTTTCCCTTTTTAAATAACTCTCTTATCTTCTTCTCTTTAAGATTTTTAT
TTACATTCTTTTCATTTGAATATTGCACTTTTATTATTCTTAACTGACAT
TCTTTACCTTTCTTAATCTTACTCTCTTTAACTTTTTAATCTTTCTCCTT
CTCTTGCATGATTATTGTCTATCTCTCATTCTTACTCAATTATCACATAT
TTATTGTTTGATTGTTTTTCCCCCCNTATTGGTATTTTATTAANTATTTA
TATATATGCAACTCATTCCCCTGATGTAACATCTTGTTCAGCTATCATCG
TGTAACTACTCCTTTCTGTCTTGTCCTTAACTTCACACTGCTCTAAANAT
GATACTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_h10.g1 MSMg01no049_h10.g1 CHROMAT_FILE:
MSMg01no049_h10.g1 PHD_FILE: MSMg01no049_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:30 2005
         (486 letters)



>mm_chr5_83707945_83708833
          Length = 889

 Score =  866 bits (448), Expect = 0.0
 Identities = 462/468 (98%), Gaps = 3/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcagaaatttttgagaaggtattatgtaagttgtttttatagaatttttttgcttatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 668 tttcagaaatttttgagaaggtattatgtaagttgtttttatagaatttttttgtttatt 609

                                                                       
Query: 61  tattctttgaatagattttgtacctctaatattttaagccatagataaaagggccttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tattctttgaatagattttgtacctctaatattttaagccatagataaaagggccttaat 549

                                                                       
Query: 121 agggaaccatgaaacatttgggaaatgttttctattagaaattatttttagtgtttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agggaaccatgaaacatttgggaaatgttttctattagaaattatttttagtgtttaaaa 489

                                                                       
Query: 181 tagaattccttctttctacaggattataatattgtgattcttttgttttg---ttttttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 488 tagaattccttctttctacaggattataatattgtgattcttttgttttgtttttttttt 429

                                                                       
Query: 238 ttttagttggtattttcacaatcttaatgaccatccagatgtctctgtgggcacgaaaga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttttagttggtattttcacaatcttaatgaccatccagatgtctctgtgggcacgaaaga 369

                                                                       
Query: 298 agcataaaatatatcggaagaagttcaactcatatgttcataggaaatcagccataattc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agcataaaatatatcggaagaagttcaactcatatgttcataggaaatcagccataattc 309

                                                                       
Query: 358 cactcatcttataagtaaatatagctattctaatctgagcaagaagtgcagaatataaat 417
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cactcatattataagtaaatatagctattctaatctgagcaagaagtgcagaatataaat 249

                                                           
Query: 418 tcactcaaaaaggcttaggaagtgcttacctattataatgcaacaatt 465
           |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 248 tcactcaaaaaggcttaggaagtgattacctattataatgcaacaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 889
Length adjustment: 10
Effective length of query: 476
Effective length of database: 879
Effective search space:   418404
Effective search space used:   418404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)