BAC Information

Click to search

BAC

Clone NameMSMg01-049I23
Chromosome5 (Build37)
Map Location 59,114,787 - 59,115,302
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049I23.T7 (MSMg01no049_i23.b1)MSMg01-049I23.TJ (MSMg01no049_i23.g1)
ACCAG278971AG278972
length1,1681,249
length of high quality
(start - end)
592 (88 - 679)532 (86 - 617)
definitionCHROMAT_FILE: MSMg01no049_i23.b1 PHD_FILE: MSMg01no049_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:42 2005CHROMAT_FILE: MSMg01no049_i23.g1 PHD_FILE: MSMg01no049_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCGNNNNNNAACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGGTAAAAGGACTTGTCCGTTTGACAGCATGAAGGAAAG
TACTAGGAAGTACTAGGACCACTTCACAGATCAGTTCTAGCTAAGCAACA
AAGAATCTAAATGAGAGCAAGAGTGGTCATAGCCGCTAGGAAAATTATTT
TAGATCTTGCTACTAAGCACTTGGAACAGCTTACATCTACTATGTAAATG
AGAGATATTAATATTAAATGCAATTTAACTGAAATAATATTAACTTTAAT
AATAATTAAATATTGAGGTTTGAATATGAAACTCCTCCTCAGTCTCTGTG
AATGGTCATGTTACATCAGAATGTTGTGGAGCCTTAGGAAGTAGAACTCC
AGAGGAGGAAGTATGTCACTGGAGGACTTTGAAGCTAAGAAGCTGTTCAT
TGCTACTTAAGACCTCTGTTTCACACCAGTGGAATGCAAGCTATGCATAT
GTCCTCTTGTGCTGTGATACACTGTATCCCATAACTCTTAGCTTAAAGGA
TTCCTCCCCAAGTGTGTGTCATCTGTTAGAGAACTAGTATCAGCTAGGAA
AGTAACTGTCTTAGTTAGGGTTTACTGCTGTGAAAAGACATCATGACCAA
GGCAAACAACACTTATAATAACATCATTTAATTGGCGCTGGGTTACAGGT
TCAGAGGTTCAGTCCAATATCATAAAGGCAGGAGCATGGCAGCATCCAGG
CAGGCATGCTGCAGGAGGACCTGAGAGTTCTACCCCTTCATGTGAAGGCT
GCTAGTAAAACACTGACTTCCAGGCTGCTAAGGCAGGGGTCGTAAAGCCC
ATACCGACATTGATATAACTACTCCCCCCCCTTTTAAGAATCTCACTCCT
TGGGCCTAACCCCCTTAAAAACCCTTCCCCATAAACCCAAAACTATATGG
TAAGGTAAAATTATACCCCCCCTTCATTTAAAAAATTCTTGGGGGGGCCA
AAAAAACCTTAATTATAAAAAAAGGTGTTATGAAACCCCTATAATTTTTA
GTTCCCAAAAAGGACCCCTCAACCCCAAAAACTTTTTGTTCCCCAATAAA
TNTCTGAACAGGTATGCTCATAAAAATAGTGGATATATCCATCTCCCTTA
TTATTCTCTTGTGGGATC
CCTTTCTTATNNNTATCATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTATAAAGTGGATCCTGGCTGGG
CATCGGGAAAGAATGACCTGTGATAGGTGCCCTCGCTGTGTCCCTCGTTT
TGGCATGCATGTATGCATGTTGTGTGTATGGTGTATGTGTCGGTTGCAGG
ATGCCCAGGTCCGAACTGCCGCCATGGTAGTGCAAGCTTTTGCCACAGTG
GAAGCAGGGCAGTCACCTCAGATTTGGTTTGCTGCCATGAAGAATGAACA
ATGAAGCCATCACTCCATAGGGTTGTAAGGCTAAGCCCTGCACAGAGGTT
AGTCTGGAAGCTGTTTGATGATCTCTGGGAGGTATGTCTGATTGCATAAG
GGTTGAGTGTCTTAGTGTCCTTCCCCCAGGAAAAACGGCACAGGAGCAGG
TCAGGGTTGCTCTGGGTAAAAACCTGTGAGCCCTTATAAGAGTCAATCCT
GTACATGTCCCTATTTCTGCACACTGGGGACCAAACCTCTATCATCACCC
AGGAAGTTTGTTCAAAAAAAATATAAAAGGGGGAATTGTGGGAAGCCATT
CAGACTCCCTGGCCAGCCAGACAGAAATCTATTCCAGGCAGTAAACAAGC
CCATGTTTGGTGGATGGCCCACCCTTAATCCCTGATTGGCTGACCAAGCC
TGCCTGGTGAGGTGATGTGACCTGTGGTGATTGGTGTGCGGTCTGCTTGT
GTCTGTATTGCTATAAATACTCTTTCATCCTCATATTATCTTTATTTTAA
TAGAAAATTTTTCTTAATAAATTTTTTTAAAATAATTCGGTGGTTTGCCT
TTTTTTTCTGATTTCTAATTTTGAAGTTCTTCCTCTTTTCTTTTTCCTTT
CTTCTCTTTTTTCATTTTTTTATTTTTTTTTTATATTTTCTTCCTTTTTC
TCTTTTTTTTCTTATTTTTTTTTTTTTAAATTTCTTTTTATTTTTTTTCT
TTTTTTTATTTTTATTTATTTCTCTTTTATTTATTTATATCTATTTACTT
CTTTTTATTAATTTATTTAATCATCTTTTCTTTTTCTTTCTTTTTTTTTT
TTCCTTCTTTCTTATTTTTATTTCTTCTTTTTATTCTTTACTTTCTATAT
CTTCTTTTCGTCTTTCTTCTCTTATTCCTCTTCTCTCCTATTACTTCTTT
CCTTTATTTATATCTATTTTTTACCTACACTTAGATATCAAAATCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_i23.b1 MSMg01no049_i23.b1 CHROMAT_FILE:
MSMg01no049_i23.b1 PHD_FILE: MSMg01no049_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:42 2005
         (592 letters)



>mm_chr5_59114311_59115302
          Length = 992

 Score =  835 bits (432), Expect = 0.0
 Identities = 495/516 (95%)
 Strand = Plus / Minus

                                                                       
Query: 77  agagcaagagtggtcatagccgctaggaaaattattttagatcttgctactaagcacttg 136
           |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct: 992 agagcaagagtggtcatagccgttagaaaaattattttagatcttgctattaagcacttg 933

                                                                       
Query: 137 gaacagcttacatctactatgtaaatgagagatattaatattaaatgcaatttaactgaa 196
           ||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct: 932 gaacagcttacatttactatgtgaatgagagagattaatattaaatgaaatttaactgaa 873

                                                                       
Query: 197 ataatattaactttaataataattaaatattgaggtttgaatatgaaactcctcctcagt 256
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 872 ataatattaactttaataataactaaatattgagatttgaatatgaaactcctcctcagt 813

                                                                       
Query: 257 ctctgtgaatggtcatgttacatcagaatgttgtggagccttaggaagtagaactccaga 316
           ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 812 ctccgtggatggtcatgttacatcagaatgttgtggagccttaggaagtggaactccaga 753

                                                                       
Query: 317 ggaggaagtatgtcactggaggactttgaagctaagaagctgttcattgctacttaagac 376
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 752 ggaggaagtaggtcactggaggactttgaagctaagaagctgttcattgctacttgagcc 693

                                                                       
Query: 377 ctctgtttcacaccagtggaatgcaagctatgcatatgtcctcttgtgctgtgatacact 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctctgtttcacaccagtggaatgcaagctatgcatatgtcctcttgtgctgtgatacact 633

                                                                       
Query: 437 gtatcccataactcttagcttaaaggattcctccccaagtgtgtgtcatctgttagagaa 496
           | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct: 632 gcatcccataactcttagcttaaaggattcctccctaagtgtgtgtcatctattagaaaa 573

                                                                       
Query: 497 ctagtatcagctaggaaagtaactgtcttagttagggtttactgctgtgaaaagacatca 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 572 ctagtatcagctaggaaagtaactgtcttagttagggtttactgctgtgaacagacatca 513

                                               
Query: 557 tgaccaaggcaaacaacacttataataacatcattt 592
           ||| ||||||||||||||||||||||||||||||||
Sbjct: 512 tgagcaaggcaaacaacacttataataacatcattt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)