Query= MSMg01no049_n23.b1 MSMg01no049_n23.b1 CHROMAT_FILE:
MSMg01no049_n23.b1 PHD_FILE: MSMg01no049_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:20 2005
(633 letters)
>mm_chr5_52239627_52240659
Length = 1033
Score = 818 bits (423), Expect = 0.0
Identities = 444/451 (98%)
Strand = Plus / Minus
Query: 179 ggataatgggaaaagcattggcctgagagtgagacaggcctgggcattgctccaaagtct 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1033 ggataatgggaaaagcattggcctgggagtgagacaggcctgggcattgctccaaagtct 974
Query: 239 gccatttgctagctgtgtaaccccttgcaaatcacccctcagagcctcagtttacttctc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 gccatttgctagctgtgtaaccccttgcaaatcacccctcagagcctcagtttacttctc 914
Query: 299 tgcacagcagggctttatttaatgcctccctctgaagacagttcatagattggatgtaca 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 tgcacagcagggctttagttaatgcctccctctgaagacagttcatagattggatgtaca 854
Query: 359 aatgcctggtctagtacctggcacctgctggaggttggatgttatttctttcctctcatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 aatgcctggtctagtacctggcacctgctggaggttggatgttatttctttcctctcatt 794
Query: 419 cttgtctaagctggcattggctccactgagatgagatgtcacttcagctcagaactgcag 478
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 793 cttgtctaagctggcattggctccactgagatgagatgttacttcggctcagaactggag 734
Query: 479 aacatcatttcattcttcattcaccaacctgagacactatagctttgttagacttttgga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aacatcatttcattcttcattcaccaacctgagacactatagctttgttagacttttgga 674
Query: 539 agtacatatgcacatgtacagacagatagctgtgtaggaatctctgttcacctcttgaac 598
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtacatatgcacatgtagagacagatagctgtgtaggaatctctgttcacctcttgaag 614
Query: 599 agttgaacatggctagaatatgcatttattt 629
|||||||||||||||||||||||||||||||
Sbjct: 613 agttgaacatggctagaatatgcatttattt 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_n23.g1 MSMg01no049_n23.g1 CHROMAT_FILE:
MSMg01no049_n23.g1 PHD_FILE: MSMg01no049_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:20 2005
(271 letters)
>mm_chr5_52104589_52105260
Length = 672
Score = 503 bits (260), Expect = e-147
Identities = 269/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 1 agcatcaatgaaatgcctctcatcctaaatggctcctgagaaaa-tagagcaatctgagc 59
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 201 agcatcaatgaaatgcctctcatcctaaatggttcctgagaaaaatagagcaatctgagc 260
Query: 60 caatgggatttataagagaggaatttcagcattgctattggtggggttttttatttttat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgggatttataagagaggaatttcagcattgctattggtggggttttttatttttat 320
Query: 120 catttcagtcagcctatccacagagctcacatccttcactgtccaatgctcacactcaat 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttcagtcaggctatccacagagctcacatccttcactgtccaatgctcacactcaat 380
Query: 180 ctcacgctcacctctcacccatcatcagtcaactcatttgcagtcactgtttgcttttta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcacgctcacctctcacccatcatcagtcaactcatttgcagtcactgtttgcttttta 440
Query: 240 aaatctgttttgttttcttttcaactctcaga 271
||||||||||||||||||||||||||||||||
Sbjct: 441 aaatctgttttgttttcttttcaactctcaga 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space: 173706
Effective search space used: 173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
