BAC Information

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BAC

Clone NameMSMg01-050C01
Chromosome5 (Build37)
Map Location 85,872,073 - 85,872,619
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050C01.T7 (MSMg01no050_c01.b1)MSMg01-050C01.TJ (MSMg01no050_c01.g1)
ACCAG279313AG279314
length1,1531,195
length of high quality
(start - end)		744 (30 - 773)780 (78 - 857)
definitionCHROMAT_FILE: MSMg01no050_c01.b1 PHD_FILE: MSMg01no050_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:01 2005CHROMAT_FILE: MSMg01no050_c01.g1 PHD_FILE: MSMg01no050_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTNTACATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
TTTGTTTAGCTCTGAGCCCCTTAATTAATGGGGTTATTTGATTTTCTGGA
GTCCACCTTCTTGTGTTCTTTATATATATTGGATATTAGTCTCCTATCTA
ATTGAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTACTGACAGTGTCTTTTGCCTTGCAGAAGCTTTCAGTTTTATGAGGTCC
CATTTGTTGATTCTCAATCTTACAGCACAAGCTATTGCTGTTCTATTCAG
GAATTTTTCCCCTGTACCCATAACTTCGAGGCTTTTCCCAACTATCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTCATATGGAGTTGCTTAATCCACTTA
GATTTGACCTTAGTACAGGAGATAGGAATGGGTCAATTCGCATTCTTCTA
CATGATAAATGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTT
TTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGG
TATTTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGT
CTGTCACTATACCAGTACCATGCATTTTTTATCACTATAGCTCTGTAGTA
CAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTATTATCCTTGA
GAATAGTTTTTGCTATCCTAGGTTTTTGTTATTCCAGATGACTTTGCAGA
TTGCCCTTTCTAATCCCTTGAAGAATTGAGCTTGNAATTTTGATGGGGAT
TGCATTGAATCTGTAGATTGCTTTTGGCACCATAGTCATTTTTACTATAT
TGCCCCTGCTAATCCATGAGCATGGGAGATTTTTCTATCTTCCCAGATCT
TCTTTCATTTCTTTCTTCGGAGCCTTGACGTTCTTATCATACAGATCCTG
TTGAAAATATTTACTGGCCCCTTTAGTTTGGAAAACTTTTGCTCTCTTCT
AATACCAATTATCCCTTTAAGTTTAACCCTTCCCCTGGTGGCCCCTGGAT
TTCCTAATCCCTTTTGGGATGGGATTCTTTTTGCATAAATTCTCTTTCTC
TTTTATGTTGGTGGCCAAAGTGTTTCTTTGGTAATCTTTTGCTCCCCTAA
TTA

CCTTCCTTTNTTTAAGAGGGAAGGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTCTCAGAAGGACAAATAG
TATTTATAAGTGCTAGATGCCAGATACATAATAAGATATAAGTGTTGATG
ATTTGATAATACAAGCAAAATGTTCCTGTTTCTTGAAAATAGAGAAACAA
TTTGAGTTAATAGACTGAAGGGAAATAGATAGTCTTGAATAGTAACCATT
CTAATATCCAATCTCGGTGGCGTGTCTATAAACTTTAAGTATCACTTCAT
GATGTTCTGGTGTATCCCTCATTAGACAAATGGTGCTTGATATTTCAGAT
AATAAGGGATTTATTTAACAAATAACTCAAATATAAATTTCTGCTTTTAC
TGTCAAAATGATTTTAGGAACACAGTTAAAGAGGTAGCTCAACTTTGAAG
AGTGTTTTGTTGAGAACAGGTGTTCAGTTCTCAGTGCCTGCATTGTGCGA
CTCACAACTGCCCTTAGTTCCAGTTCCAGGGCATTTGATAACTTTATGGC
ATCTGCAGACACTTGAATTCATGTGCATACACCCCTGAATAGATGCACAC
ATAAACATAAGGTCCAAAATAAAATAATTTTTAAAAGATTTTTTATAAGA
TTTACTTTTCCTGAGTTTTGTAGAAAAAATTATGTGTATAAACTGGGAGT
TACTGAGTGAGGTAACCCAATCACAAAAGAACTCACATGATATGCACTCA
CTGATAAGTGGATTTTAGCCCATAAACTTAGAATATCCAAGATACAACTT
GCAAAACACATGAAACTCAAGAAGAAGGAAGAGCAAAGTGTGGACACTTT
GCCCCTTAGAAATGGGAACAAAACACCCAAGGAAGGAGTTACAGAGACAA
AGTTTGCAGCTGAGACGAAAGGATTGACCATCCAGACCCTGCCCCAACCG
GGGGTCCATCCCATAATCAGCCACCAAACAAAGACCCTATTGCATATGCC
AGCAAGATTTTGCTGAAAGGAACCCTGAAATAGCTTGCCCCTTAATGAGG
TTAAACCCGGTACCTGGGCAAACACCAAAATTGGAATAATTGTCCACCCA
CCTTTTGGAATGGGAACCCACAATCCCCCCCCAGGGGGGAGTTTTGGAAA
AGTTCCCCCCCGGGCCTTTAAGGGGCCCTCCAACCTTCTATAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_c01.g1 MSMg01no050_c01.g1 CHROMAT_FILE:
MSMg01no050_c01.g1 PHD_FILE: MSMg01no050_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:01 2005
         (780 letters)



>mm_chr5_85872073_85873252
          Length = 1180

 Score = 1004 bits (519), Expect = 0.0
 Identities = 540/547 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   tctcagaaggacaaatagtatttataagtgctagatgccagatacataataagatataag 65
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 547 tctcagaaggacaaatagtatttataagtgctagatgttagatacataataagatataag 488

                                                                       
Query: 66  tgttgatgatttgataatacaagcaaaatgttcctgtttcttgaaaatagagaaacaatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgttgatgatttgataatacaagcaaaatgttcctgtttcttgaaaatagagaaacaatt 428

                                                                       
Query: 126 tgagttaatagactgaagggaaatagatagtcttgaatagtaaccattctaatatccaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgagttaatagactgaagggaaatagatagtcttgaatagtaaccattctaatatccaat 368

                                                                       
Query: 186 ctcggtggcgtgtctataaactttaagtatcacttcatgatgttctggtgtatccctcat 245
           |||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctcggtggtgtgtctataaacagtaagtatcacttcatgatgttctggtgtatccctcat 308

                                                                       
Query: 246 tagacaaatggtgcttgatatttcagataataagggatttatttaacaaataactcaaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tagacaaatggtgcttgatatttcagataataagggatttatttaacaaataactcaaat 248

                                                                       
Query: 306 ataaatttctgcttttactgtcaaaatgattttaggaacacagttaaagaggtagctcaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ataaatttctgcttttactgtcaaaatgattttaggaacacagttaaagaggtagctcaa 188

                                                                       
Query: 366 ctttgaagagtgttttgttgagaacaggtgttcagttctcagtgcctgcattgtgcgact 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctttgaagagtgttttgttgagaacaggtgttcagttctcagtgcctgcattgtgcgact 128

                                                                       
Query: 426 cacaactgcccttagttccagttccagggcatttgataactttatggcatctgcagacac 485
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cagaactgcctttagttccagttccagggcatttgataactttatggcatctgcagacac 68

                                                                       
Query: 486 ttgaattcatgtgcatacacccctgaatagatgcacacataaacataaggtccaaaataa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ttgaattcatgtgcatacacccctgaatagatgcacacataaacataaggtccaaaataa 8

                  
Query: 546 aataatt 552
           |||||||
Sbjct: 7   aataatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 780
Length of database: 1180
Length adjustment: 10
Effective length of query: 770
Effective length of database: 1170
Effective search space:   900900
Effective search space used:   900900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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