Query= MSMg01no050_f24.b1 MSMg01no050_f24.b1 CHROMAT_FILE:
MSMg01no050_f24.b1 PHD_FILE: MSMg01no050_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:36 2005
(657 letters)
>mm_chr5_109024014_109025070
Length = 1057
Score = 1141 bits (590), Expect = 0.0
Identities = 644/668 (96%), Gaps = 13/668 (1%)
Strand = Plus / Plus
Query: 1 caagacccaaagggccagacaatgcacct-t-tttccctccccttgttttctggagactg 58
|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 192 caagacccaaagggccagacaatgca--tatatttccctccccttgttttctggagactg 249
Query: 59 tggagaatagacattaaggcacagacactgttacaataccccaaagctttacccatgacc 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 250 tggagaatagacattaaggcacagacactgttacaataccccaaagctttacccgtgacc 309
Query: 119 accacagtattctgagtcttctcatatggtatccagccaaatctgtcctgacagcaagtg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 accacagtattctgagtcttctcatatggtatccagccaaatctgtcctgacagcaagtg 369
Query: 179 cttcatctcccagtgacctttagatctagggcaagttgatggcgtgagggtcccagttta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cttcatctcccagtgacctttagatctagggcaagttgatggcgtgagggtcccagttta 429
Query: 239 caatgagttttaaagcagacagatgtgaagt---------aactgttaggacatgagtga 289
||||| |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 430 caatgggttttaaagcggacagatgtgaagttgccgcagtaactgttaggacatgagtga 489
Query: 290 cactatgtcactgtacctccacgagaccttatttttcatggtagagtaccaaagacactg 349
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 490 cactatgtcagtgtacctccacgagacccgaggattcatggtagagtaccaaagacactg 549
Query: 350 tcttgtttttgcttcacatactcagtatctctgctgctcacacctcctgcccagtaggac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcttgtttttgcttcacatactcagtatctctgctgctcacacctcctgcccagtaggac 609
Query: 410 ccaacatgtggaaaacagctaagagctcaattgctgaaatccttccagccacccctagca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ccaacatgtggaaaacagctaagagctcaattgctgaaatccttccagccacccctagca 669
Query: 470 gaggctagaatggggacacagatgcaaagccactctcatgtgacctgagaaacacacctc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaggctagaatggggacacagatgcaaagccactctcatgtgacctgagaaacacacctc 729
Query: 530 catcatgactctaccaaccaggcagtaagcaactaaggtgggtcccattcataagagaat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catcatgactctaccaaccaggcagtaagcaactaaggtgggtcccattcataagagaat 789
Query: 590 tgtgcacatcggaaagagcactaattactcccattgacaaatatggagccccttactggc 649
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgtgcacatcggaaagagtactaattactcccattgacaaatatggagccccttactggc 849
Query: 650 ttggacct 657
| ||||||
Sbjct: 850 tcggacct 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_f24.g1 MSMg01no050_f24.g1 CHROMAT_FILE:
MSMg01no050_f24.g1 PHD_FILE: MSMg01no050_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:36 2005
(570 letters)
>mm_chr5_109043425_109044394
Length = 970
Score = 613 bits (317), Expect = e-179
Identities = 317/317 (100%)
Strand = Plus / Minus
Query: 253 agaccacactttctacccttcccaaaacagttccaccaactaggggccaagctgtcaaat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 agaccacactttctacccttcccaaaacagttccaccaactaggggccaagctgtcaaat 911
Query: 313 atatgagccagtgggggctattcttattcataccaccacacctggcaactttgatttcca 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 atatgagccagtgggggctattcttattcataccaccacacctggcaactttgatttcca 851
Query: 373 ggttccacgtggtgaaaggagagaactggctctcaaaagttgttctctgacctccacaca 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ggttccacgtggtgaaaggagagaactggctctcaaaagttgttctctgacctccacaca 791
Query: 433 aatgctgtagcatatatgcgcccttttacacaaaataaatgcatacatcatacatatata 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aatgctgtagcatatatgcgcccttttacacaaaataaatgcatacatcatacatatata 731
Query: 493 cttacttatttaaacttgcaaacagtgtgatgttattgttggtagtggtggtgaatgtgt 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cttacttatttaaacttgcaaacagtgtgatgttattgttggtagtggtggtgaatgtgt 671
Query: 553 gttaggaaaaaagaata 569
|||||||||||||||||
Sbjct: 670 gttaggaaaaaagaata 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
