Query= MSMg01no050_h06.b1 MSMg01no050_h06.b1 CHROMAT_FILE:
MSMg01no050_h06.b1 PHD_FILE: MSMg01no050_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:47 2005
(359 letters)
>mm_chr5_86096864_86097622
Length = 759
Score = 598 bits (309), Expect = e-175
Identities = 336/345 (97%), Gaps = 2/345 (0%)
Strand = Plus / Plus
Query: 16 ggaattctctcttaca-tgaagagtagacaaaactacagagtataagcgattattataat 74
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggaattctctcttacaataaagagtagacaaaactacagagtataagcgattattataat 275
Query: 75 acggaagctgaacaagaaacagactccccctctagtcagctctcaggaggctccatgaaa 134
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 276 acggaagctgaacaagaaacagactccct-tctagtcagctctcaggaggctccatgaaa 334
Query: 135 gaaaagctctgtgatggccgcccttagaaatgctcaaagctcagtagtttaggaaaaaga 194
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 335 gaaaagctctgtgatggccgaaattagaaatgctcaaagctcagtagtttaggaaaaaga 394
Query: 195 gagaagtttcactaattgttgggccaacttaatagcattgtcttccagtttatcagtggg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gagaagtttcactaattgttgggccaacttaatagcattgtcttccagtttatcagtggg 454
Query: 255 acaaacaagtttgctaatcttttctttttaatttttctttaattttttattaggcatctt 314
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 455 acaaacaagtttgctaatcttttctttttaattgttctttaattttttattaggtatctt 514
Query: 315 cctcatttacatttccaattctatcccaaaagtcccccataccca 359
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cctcatttacatttccaattctatcccaaaagtcccccataccca 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_h06.g1 MSMg01no050_h06.g1 CHROMAT_FILE:
MSMg01no050_h06.g1 PHD_FILE: MSMg01no050_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:47 2005
(584 letters)
>mm_chr5_86240266_86241251
Length = 986
Score = 886 bits (458), Expect = 0.0
Identities = 552/584 (94%), Gaps = 4/584 (0%)
Strand = Plus / Minus
Query: 1 gcacagaaaatgaaatcatgaaattttcagctatatgagtggaatcacaacccatcatat 60
|||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 864 gcacagaaaatgaaatcatgaaattttcaggtaaatgagtggaatcacaaaagatcatat 805
Query: 61 tgagtgaggtttacctagatctcttgtcctatttccaaattaacaatttaattattaaag 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 804 tgagtgaggtttacctagatctcttgtcctatttccaaattaaaaatttaattattaaag 745
Query: 121 atgttttggggtatgtaagaaa--acatttgtcacaatagcaactcagcacggacag-aa 177
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 744 atgttttggggtatgtaagaaaacacatttgtcacaatagcaactcagcacggacagaaa 685
Query: 178 aaaatcatcagatatgtttatttcagttaacttaatccaatcattctcaagatgaatttg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaatcatcagatatgtttatttcagttaacttaatccaatcattctcaagatgaatttg 625
Query: 238 ataacaacaaaacctttagttctaacgttacccataaaagaaaaagaaaaatttggactc 297
|||| ||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct: 624 ataagaacaaaaactttagttctaacgttatcaataaaagaaaaataaaaatttggactc 565
Query: 298 acaagtagtctatctctcagaaacctgtttaaatcacaaccatattaaggacttgaaggc 357
||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 564 acaagtagtctatttctcagaaacctgtaaaaatcacaaacatattaaggacttgaaggc 505
Query: 358 ttttacacttcttccctctattatgcacatttactttggacgtcagatctatttctctgt 417
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 504 ttttacgcttcttccctctattatgcacatttactttggatgttagatctatttctctgt 445
Query: 418 gtgtgcatgtcatctagcatgcacaagtatgtggactttccatgtgcccaaagcagacgt 477
|||||||||| || ||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 444 gtgtgcatgt-atgtagcatgcacaagtatgtggattttccatgtgcagaaagcagaggg 386
Query: 478 tattaccggacatcctctgtcttctcttgattctattattaataatccaatcataacaaa 537
||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 385 gattacaggacatcctctgtcttctcttgattctgttattaataatcaaatcataacaaa 326
Query: 538 tctcaatttgtcttgttgggttggttgaaagcaaatgctttaag 581
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcaatttgtcttgttgggttggttgaaagcaaatgctttaag 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 986
Length adjustment: 10
Effective length of query: 574
Effective length of database: 976
Effective search space: 560224
Effective search space used: 560224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
