Query= MSMg01no050_h08.b1 MSMg01no050_h08.b1 CHROMAT_FILE:
MSMg01no050_h08.b1 PHD_FILE: MSMg01no050_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:48 2005
(420 letters)
>mm_chr5_86096864_86097683
Length = 820
Score = 694 bits (359), Expect = 0.0
Identities = 394/409 (96%), Gaps = 9/409 (2%)
Strand = Plus / Plus
Query: 16 ggaattctctcttacaatgaagagcatta----aaactaccgagtataagcgattattat 71
|||||||||||||||||| ||||| || ||||||| |||||||||||||||||||
Sbjct: 216 ggaattctctcttacaataaagag---tagacaaaactacagagtataagcgattattat 272
Query: 72 aatacggaaccctgaacaagaaacagactcccttctagtcagctctcaggaggctccatg 131
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aatacggaagc-tgaacaagaaacagactcccttctagtcagctctcaggaggctccatg 331
Query: 132 aaagaaaagctctgtgatggccgaaattagaaatgctcaaagctcagtagtttaggaaaa 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaagaaaagctctgtgatggccgaaattagaaatgctcaaagctcagtagtttaggaaaa 391
Query: 192 agagagaagtttcactaattgttgggccaacttaatagcattgtcttccagtttatcagt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agagagaagtttcactaattgttgggccaacttaatagcattgtcttccagtttatcagt 451
Query: 252 gggacaaacaagtttgctaatcttttctttttaatttttctttaattttttattaggtat 311
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 452 gggacaaacaagtttgctaatcttttctttttaattgttctttaattttttattaggtat 511
Query: 312 cttcctcatttacatttccaattctatcccaaaagtcccccatacccacccacccccact 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttcctcatttacatttccaattctatcccaaaagtcccccatacccacccacccccact 571
Query: 372 cctcctacccacccactcccactttttgcccctggcattcccccgtact 420
|| ||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 572 cc-cctacccacccactcccactttttggccctggcgttcccccgtact 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_h08.g1 MSMg01no050_h08.g1 CHROMAT_FILE:
MSMg01no050_h08.g1 PHD_FILE: MSMg01no050_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:48 2005
(478 letters)
>mm_chr5_86240368_86241248
Length = 881
Score = 810 bits (419), Expect = 0.0
Identities = 465/481 (96%), Gaps = 3/481 (0%)
Strand = Plus / Minus
Query: 1 ggaatcacaaaagatcatattgagtgaggtttacctagatctcttgtcctatttccaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ggaatcacaaaagatcatattgagtgaggtttacctagatctcttgtcctatttccaaat 663
Query: 61 taagaatttaattattaaagatgttttggggtatgtaagaaa--acatttgtcacaatag 118
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 662 taaaaatttaattattaaagatgttttggggtatgtaagaaaacacatttgtcacaatag 603
Query: 119 caactcagcacggacag-aaaaaatcatcagatatgtttatttcagttaacttaatccaa 177
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caactcagcacggacagaaaaaaatcatcagatatgtttatttcagttaacttaatccaa 543
Query: 178 tcattctcaagatgaatttgataagaacaaaacctttagttctaacgttatccataaaag 237
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 542 tcattctcaagatgaatttgataagaacaaaaactttagttctaacgttatcaataaaag 483
Query: 238 aaaaagaaaaatttggactcacaagtagtctatctctcagaaacctgtaaaaatcacaaa 297
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 482 aaaaataaaaatttggactcacaagtagtctatttctcagaaacctgtaaaaatcacaaa 423
Query: 298 catattaaggacttgaaggcttttacacttcttccctctattatgcacatttactttgga 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 422 catattaaggacttgaaggcttttacgcttcttccctctattatgcacatttactttgga 363
Query: 358 tgttagatctatttctctgtgtgtgcatgtatgtagcatgcacaagtatgtggattttcc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgttagatctatttctctgtgtgtgcatgtatgtagcatgcacaagtatgtggattttcc 303
Query: 418 atgcgcacaaagcagacgttattaccggacatcctctgtcttctcttgattctattatta 477
||| ||| |||||||| | ||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 302 atgtgcagaaagcagaggggattacaggacatcctctgtcttctcttgattctgttatta 243
Query: 478 a 478
|
Sbjct: 242 a 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 881
Length adjustment: 10
Effective length of query: 468
Effective length of database: 871
Effective search space: 407628
Effective search space used: 407628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
