BAC Information

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BAC

Clone NameMSMg01-050J16
Chromosome5 (Build37)
Map Location 58,185,534 - 58,382,515
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050J16.T7 (MSMg01no050_j16.b1)MSMg01-050J16.TJ (MSMg01no050_j16.g1)
ACCAG279634AG279635
length1,2291,298
length of high quality
(start - end)
316 (61 - 376)267 (131 - 397)
definitionCHROMAT_FILE: MSMg01no050_j16.b1 PHD_FILE: MSMg01no050_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:08 2005CHROMAT_FILE: MSMg01no050_j16.g1 PHD_FILE: MSMg01no050_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,382,200 - 58,382,515)(58,185,534 - 58,185,799)
sequence
CTCCTATAGGGAGAGGACCGCGGAATTCTTGTATTATAAGTTTTACCATT
AAGAACCTTGAGATGCAATAGCCACATGCAATAATTCCTTTGAAACATCC
ACATGTGTGTTGCTCTAGGGGGTCCTCAAATAGTGCCATTCCTATTCCAA
GAGAAAACGTTTGTCATTTAATATTCGGTATTAACACAAATGTTTTCCTC
AGAATTATTGTCTAAATTAGGTGCTTTAAAATACATCAATATATCATTAA
CTTCTTACTTTACCATATTAGATCTATAGAAGAATCAATTCTCCCTAACA
ATGGCAAGAGAACCTCATCACTCTCTAAATTCATTTTTAATTAGCATCAT
CTGCATTAATTGGTGTAGCTGATAGCATTTCTGTACAGAGAATTGCAATT
CTATATTTGAAATGATCGTAATATGTCTCTTGGTCCTACATCTATCTCTC
CAAGAAGAACCATAGTCCTTTCTTTCAGTATTCCCTCTGTACATATTCTC
CGACGCATTGTTCCCTAACCTTTTGCAAGACATTAACTAACGAACGCTAT
AGTAGAGGTGCTCTGTTCAGATGAATTTTCAGGGAAATATATGCCACTGA
CTTCCTCTGCACGATCACAAATATACTTAAAATTATTGTCCCTTTCCTCT
ATCCCTCATAACTCTATTGCTTTGCCACATCTTCTTCCTCCTTCTCCTTC
TCCTCCCTCTTCTCTTTCTCAGTTCCCCTCCCCTTTTCTCTTCCTTGCAT
GGACGTCCAGAAAACCATCATATATTGCTATCCCTGCCAGATTCTTTTCA
AAACTTGCCTTCTAAAACTCTTTCAGTCATATCCTTCCCACTTTATTTTT
TACCTAAATCTATATTGTAATTCTTTGAAATCAATTGAACCACATAACCC
TCTTACTTTGGCTTTTCGTTTAACAACCTTCTCTTTCTACCTTTCTAATT
TTTTAATATTTTTCCCCTCTCTTTTGCCCAAATCCCTCCTATTTTGGTTT
CATTTTTTCCCCCCACCCTTATTAAATATATTTTTACCTGCTTATATTAT
ACTGGTCCCCCTTCTTTTTAACTAATTTTCGTAATCTCCCATGCTCCCAA
TAAAATTTTTCCTTCTAACATTAGGGCGGATCTGTTTGCCTCTTCATTTT
CCTCTTTTTTTTTTAAAATTTCTGTTAACCTCTTATCATTGTTACCCCTC
CGTTACATAGTGTAATATTTTTTCTCTCC
TTAATTGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCCTTTAATATTCAAAGATATAGCTCTCTCTCA
CTGTTTTCCTTTTAAACATGCAAGTCAGGCATGAAGATAATCAGATATTT
GAGTGTCTAATGTGATTCTCAAGATTCTATTACCAGCCATTGACATGATT
TACAAAGGGTAGCGTCATGGAGAGTCTGTCAGAGTTCCCTCTGCTTTTGG
ATGGCTTGAAGGAAGAATGTGACTTAGAAATAATCTACCATTTGCGTGAC
ATAAAAGGGTCTCTCATCCCTCTTCACTCCCTCTTCAGATGGTCTGCATT
TGTCTCCATTACATGCAATGGAGCTACCTAGCAACCCTGACAGTCACCTA
TCATAAGAGTGGCCTCTAGCTTTTCCCAGGAGACAGTGGCCTTGGTAGCT
TTTCTCTGGAGCTGCGAAACAAGAAACATTTAAGGGAAGGCTTACTCTGC
TTGTCATTGAAATCGTGCTTAGGTAATGCATTATTTCATCCTGTGACTTT
ACCTTTATCTTAATGAAACCCATTGTACAGGCTACTATTTGTTCTTAGGA
CGTTTGTATTTATCGTTTGTATAACCATATCATGCAGAAGTTACTTAAGG
TTTATACCTCTCCTTTACCTTCTTTGTCTGACTCCTATTCTCCCATAATC
CATTTTCCCTTTAATATGATTCTTCCCAGGCCCCACTAATTATACCATTT
CCTATGGATCATTTTCCTTATGACCTACTGTTCTTCCAAACTTCTACCTT
TTCCCCTTCCTGCCTTCCTCTTATTTTGTCGAATATGATTTTTGCTTTGT
TCACTCCTCCCCTTATTTATATTAGTCTCTTTTTGATATAACTTCCCTTC
TCTCTTTGTTCTTTAATTTTAAAAATTGGCTTTTTACTATTTTCCTCCAA
TATCTTCATTTTTATTCGGTTTTTTCCTAATAATCTGGTCTTCTTTTAAC
CCCTATATGTCCTATCTAATTCCTTTTCCCTTTTTCCTATTATTCATTTT
CCCTTTGTCCTCTTCTTTTTATATAAACTCGTCCTATTTTACCTGCCACT
CTTTAATAATTTTCTTGTAGAAACTTCTTCTGTGTCTCCTCCTCGCTTTA
TCAAGTTGTTATTTCTCTTTCCCTTTCTCTTCTCTCTACTCTTATTGTCA
CATGTCTCTCTCTNTGACCTTTATATAGTTGCTCCTATTTATCATCATAT
GTGGCTTGTTCCCCTCTTAAGATATACTATTTCTGTTTCTACTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_j16.b1 MSMg01no050_j16.b1 CHROMAT_FILE:
MSMg01no050_j16.b1 PHD_FILE: MSMg01no050_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:08 2005
         (316 letters)



>mm_chr5_58382000_58382715
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgcaatagccacatgcaataattcctttgaaacatccacatgtgtgttgctctaggg 60
           ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||
Sbjct: 516 agatgcaatagccacatgcaataatttatttgaaacatcaacatgtgtgttgctctaggg 457

                                                                       
Query: 61  ggtcctcaaatagtgccattcctattccaagagaaaacgtttgtcatttaatattcggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggtcctcaaatagtgccattcctattccaagagaaaacgtttgtcatttaatattcggta 397

                                                                       
Query: 121 ttaacacaaatgttttcctcagaattattgtctaaattaggtgctttaaaatacatcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaacacaaatgttttcctcagaattattgtctaaattaggtgctttaaaatacatcaat 337

                                                                       
Query: 181 atatcattaacttcttactttaccatattagatctatagaagaatcaattctccctaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atatcattaacttcttactttaccatattagatctatagaagaatcaattctccctaaca 277

                                                                       
Query: 241 atggcaagagaacctcatcactctctaaattcatttttaattagcatcatctgcattaat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atggcaagagaacctaatcactctctaaattcatttttaattagcatcatctgcattaat 217

                           
Query: 301 tggtgtagctgatagc 316
           ||||||||||||||||
Sbjct: 216 tggtgtagctgatagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no050_j16.g1 MSMg01no050_j16.g1 CHROMAT_FILE:
MSMg01no050_j16.g1 PHD_FILE: MSMg01no050_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:09 2005
         (267 letters)



>mm_chr5_58185334_58186000
          Length = 667

 Score =  468 bits (242), Expect = e-136
 Identities = 260/266 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaagataatcagatatttgagtgtctaatgtgattctcaagattctattaccagccat 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||
Sbjct: 201 atgaagataatcagatatttgagtgcctaatgtgattctcaagattctattaagagccat 260

                                                                       
Query: 61  tgacatgatttacaaagggtagcgtcatggagagtctgtcagagttccctctgcttttgg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgacatgatttacaaagggtagcgtcatggaaagtctgtcagagttccctctgcttttgg 320

                                                                       
Query: 121 atggcttgaaggaagaatgtgacttagaaataatctaccatttgcgtgacataaaagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcttgaaggaagaatgtgacttagaaataatctaccatttgcgtgacataaaagggt 380

                                                                       
Query: 181 ctctcatccctcttcactccctcttcagatggtctgcatttgtctccattacatgcaatg 240
           ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ctctcattcctcttcactccctcttcagatggtgtgcatttgtctccattacatgcaatg 440

                                     
Query: 241 gagctacctagcaaccctgacagtca 266
           ||||||||||||||||||||||||||
Sbjct: 441 gagctacctagcaaccctgacagtca 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)