BAC Information

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BAC

Clone NameMSMg01-050M08
Chromosome5 (Build37)
Map Location 45,026,931 - 45,027,262
singlet/doubletsinglet
Overlap geneLdb2
Upstream gene5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
Downstream geneLOC100041481, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050M08.T7 (MSMg01no050_m08.b1)MSMg01-050M08.TJ (MSMg01no050_m08.g1)
ACCAG279745AG279746
length1,2411,258
length of high quality
(start - end)
280 (114 - 393)336 (120 - 455)
definitionCHROMAT_FILE: MSMg01no050_m08.b1 PHD_FILE: MSMg01no050_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:32 2005CHROMAT_FILE: MSMg01no050_m08.g1 PHD_FILE: MSMg01no050_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTCCTTCC
AATTGGGGCCCTTTAAGCCTTCCCAGCTAACCTCTTTGGAGACATCCTCA
CCCTTATATCCCGAAGTGTTTCCATAGTGACTGTAAGTGTATGGAGCTGC
CTATTAAGATTCATTACCACAGCTGGGCAGTGGTGGCGCTCGCCTTCAAT
CCCAACACTTGGGAGGCAGAGGTAGGCAGATTTCTGAGTTCGAGGCCAGC
CTGGGCTACAGAGTGAGTTCCAGCACAGCCAGGACTACATAGAGAAACCC
TGTCTCAAAACAAAACAAAACAAAACACAACAAAACAAAACAAAACAAAA
CAAAACACAAACACAAACACCAACACAAACACAAACACAAACAAATTTTA
TCACAAACAAACACAAGAGTCATTACCACAGAGAAGGTTTTGCTGTGTGC
TGGACACCGCATCGGTGGAGAACATCAACATCCTACCACCAGTTTAGTTC
TTGAGTCTTGTCTCGAGTTCAATCTACCCTCCTGGAATCTATTAGTCCAG
CTGCTTGAGCAAACTGATGCTTAATTTAATGGTCAGCTTGATGACCTGTC
CATACCAAGTTGACCTCTGGTATGTCCGCGGCATGCATTGTCTTAACTGT
CCTAATTACTATGTGATCACCTACTCTAATCCTCATTTATATCCTCTGGT
ATCCTGTATAATATAACTTCCCCTTTCCCGTGTCTTCTTGACCTTCTACC
CTTGCTGAACCACTCTTCCCCTCACCCCATCTTTTGTTGCTTTGAACTCC
CTGGCCTCGAAAAAAAATTCAATTTATTTCCCCCTTTCCCCTCGCGTTTT
AAAATTATCCCTTTTTCTACTAAATACTTCATTCCTGTTCCCTATGCTTG
TTATTTCCTCTTTTCTTTCCCCCCAAAATTCTAATTAAACCACTTTCTTC
CTTTCTTTATCTATCTTATTTTGTCTTTTTTACTTACTATATGTTTCTTG
GTTTTTCTCCATGCGTTATCTTTTACCCCTTTCATCTTATCCTTTCTTCC
AACTCTTTCTCAATAACTCTCTCCCCTTCTTATGCTCTCTTCCTTCTTTC
TTATTAACCATATTCAAATATTCTTTTTATTCTTTATTCTCTTTAATTTG
TATCAACTATCTCTCTGCTTACTTACACTTATTCACTATATCTTTCTCAT
CATTTCTCTCACTCTTCTTTTCTTCATACTTTCATCTCTTG
NTTTAGCATGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTCCTTTGGAGAAAAATGGATTGCTATCATGAATAC
AAAGCACCCTTTGACCCCCTCATCACACATGAGATGCATGCCAGAGAAGC
TATGGGTCATGCGAACAGCTGCGTATGGAGTCACTTACACAGCCTGGGAA
CTTTTCCCAGAGGGACGATCCGATCCGAAAGTATGACTAAAACTCATCCT
TTAAGAATTTTAATAATCTTATCAAACAGGTTTTTTTAATTTCTCCTGTA
TTGACATGTTTCTCACCACAGACATTCCAGGAAAGGGGATCTGTACCAAC
TTTCTACATGCATTCATTGTTACCTTTCGTTAAATTAGAATCTTATATTA
TTTATACATGTTCCCTTCATTAGAAGGATTGTTTTGCCCTGCTTCTGCCC
ATCTCTTTGCCCCCCCGACACCCCATGTGTCCCATGCGCAATTGTGCCTT
TTAAACATTTCTAAAAGTCTATCGTGGGGCTTTCCAACCTTCAGATCTCT
TAAAGTATATCAACCCCCTTCCCCAAAAAAATGCTCTCAGAATTAAGTTC
CCTTGCTCTGGGGCAGAAATTTTAGAAAGGTTGTGGGAAAGCAGCATATA
TCCCCCCAATCTGAGACTCTGGTCTTCTTTACTAAATGATAGGGAGGGAG
GCATTTATTATCTAATGAATGCAGCTTGATCGACAAAAGCACTTCCTAAC
ATTGCACCTAAAGAACAAGAGATAAAAGATGCCCATGTAAAGTCCCAACC
CAAATGAAGATGAATTGCTTTGGCATAAGGTAAAATGCCCCTTAGGCACT
GCAAATTCCTTTATTCCCCCAGGAAATGATTTAATCCTCCTTTCTACTCG
GTTGGCCTGTCATTGGTCCCCACATCCTATGGAATATATACGCCCATAAT
TTCATGGCTTTCTTGTCCTTTGCAAGAAATGCTCTAATTTATAAAGGCCC
TAAACGTGGTGAATTATAAACCTCCCCTATTTTGTTTTTCCTAACTATTT
TACTTTCCACTTCCCTACTCCCTGCCATGCTCTTCTTATAATAACCTGCA
TCATATGGGCCTCTTCTCATATCACGATATTGAATGTAATACACTTTCTC
TCAAAACAAATCTCTTCTCTAATGCTTTATAACCCCTTCTCTCCTGGATT
CTTTTCCCATTTTTTTTGTCTATAATCAAACTAATCGTGTCATTTTCTCA
TCTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_m08.g1 MSMg01no050_m08.g1 CHROMAT_FILE:
MSMg01no050_m08.g1 PHD_FILE: MSMg01no050_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:32 2005
         (336 letters)



>mm_chr5_45026731_45027466
          Length = 736

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcacacatgagatgcatgccagagaagctatgggtcatgcgaacagctgcgtatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcacacatgagatgcatgccagagaagctatgggtcatgcgaacagctgcgtatgga 260

                                                                       
Query: 61  gtcacttacacagcctgggaacttttcccagagggacgatccgatccgaaagtatgacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacttacacagcctgggaacttttcccagagggacgatccgatccgaaagtatgacta 320

                                                                       
Query: 121 aaactcatcctttaagaattttaataatcttatcaaacaggtttttttaatttctcctgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aaactcatcctttaagaattttaataatcttatcaaacaggtttttttaatttctcatgt 380

                                                                       
Query: 181 attgacatgtttctcaccacagacattccaggaaaggggatctgtaccaactttctacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgacatgtttctcaccacagacattccaggaaaggggatctgtaccaactttctacat 440

                                                                       
Query: 241 gcattcattgttacctttcgttaaattagaatcttatattatttatacatgttcccttca 300
           |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||
Sbjct: 441 gcattcattgttacctttcgttaaattagaatcttatattagctaaacatgttcccttca 500

                                           
Query: 301 ttagaaggattgttttgccctgcttctgccca 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 ttagaaggattgttttgccctgcttctgccca 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)