BAC Information

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BAC

Clone NameMSMg01-051B06
Chromosome5 (Build37)
Map Location 71,372,512 - 71,372,933
singlet/doubletsinglet
Overlap geneGabra2
Upstream geneGabrg1
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051B06.T7 (MSMg01no051_b06.b1)MSMg01-051B06.TJ (MSMg01no051_b06.g1)
ACCAG279961AG279962
length1,236678
length of high quality
(start - end)
415 (43 - 457)33 (173 - 205)
definitionCHROMAT_FILE: MSMg01no051_b06.b1 PHD_FILE: MSMg01no051_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:15 2005CHROMAT_FILE: MSMg01no051_b06.g1 PHD_FILE: MSMg01no051_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATAATNNNNNAAGTCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCACATTCCTATGTACAAAGAAGGTTTCTGAAAGCTCAGTGGT
GGAAGGTAGAGGCAGGAAGATTTATATGGGTTTCCCCCCCATCTTTCTTT
GACAATTGGTGAGTTCTAGATTCAATGTGACACCCAATCTCAGTAAAGCA
AGGTGGGGAGAGTTAAATGAAGACACCTAAGGTATCTTCCAGACTCCATA
GTATACACAAAGGTATTTGCACATGCAGCAAATGCATGCATACAGCACAT
ACAATACATACATACATACATACATACATACATACATACATACATACATA
CATACATACGTACATACATATACACACACACACACACCTATCCATACACA
AAAGAGAATATTCGTTGTATGGATTTCATAGTAGGCCCCTGGAAGACCAC
TCCAGAGGGTTTTTTTGCCTCCCCAACTCTAAACTTCCCTGATGGCAAAA
AAAGAATCTGCTGGCAGAGGATATCCACTGAAAATATTTCCAGGTACACG
CTTTAGGGTTTAGACTTCCTTAAGGCAACAGACAAATATTCAGAATAAAA
CATAAATTAATCACAAATATTGTGAAGGAACCTTTGAGAATGAGATGTAC
ATACTTATGGAAAACATTGGCTCTCTCCTTATAGTCTATAAGGTCACATA
CTACCAGCGTTAATTGTATACTTACTAATCATCTGTACTTAAGACCATAT
GTCTTCATTCTTTTATTAATACAGATTTTATGAATTCTATTCACTCCTAT
TACCTTTTCTTTGATTGTCTTCTAAACCTCTGTTTTACTTTTTTTAATTT
TATACTTTGTTCACCCCTTGTTATACCTTATACTTTTCTTCTTTCTTTTT
TCTTTTTTTTTTATTTTCTTTCCTCTCTTTTCCTTATCCTATCCTTCTTC
TTTTCTTCTTTCTTCTTCTTTCTTCTATTTTTCTTCTCTCTTCATCTTCT
TGCTATTTTTAATCTATTTCTCTCTCCTTCTTTTTTTTTTCTCTTACTCC
CTCTTCACTTTCATATTCCATTCCTTCTTCTCATTTTATCCTTTTNCTAT
ATTCTTTCATTTTCTCCTTTTTTTTCTTCTTATTCTTTGTTCTTATTTAT
TTTTTTTCCCCTCATNTTTTTANTTCTTCTTTTATTGTCCCCATCTTATA
TTTCCCTTCTCTTTTCTNTATTCTTTCCTTCTTTTT
GGGGGGGGGNNGGNNNNNNNNNNNNNNNNAAGAGGGNGGNAAAAAAAGNN
AGGATTTTTTGTTTTGTGATTCTTCNNTCCCCCCCCCTCCTCTCTCTATG
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGATTCAAGGCACCTTCCCAAACANTAATAAA
AGCAATAATCCCAGCCAAACTAGTTAGCCAAAATTCAAAACCTAAAGGGG
ACAGAAAACCTTGAAAAGCAATTCCCCCACCTAAAAAACCGGGGGAAAAA
AAAAAAAAGGGGGTTTTTCCCAAAATTTTTTTTTTCCCCCTAAAAACTTA
TTATTTTTCCCCAAAAAAAAAAGGCGGGTTTTCTTTTTTAAAAAGGCGGG
TTTTCTTTTTCTTCCCCGGAGAGAATAAAAAAAATATTTTTTTTTTTTCT
TTTCTTCCACCCACCCTCTCCTTTTTATAACTATATCAAAATTTTTAATT
TTTTTATTTTTTTGTTAATAATAATAATTAACCTTTTTCCCCCCAAAATA
ATTTGTTTTTTTTTTTGTAGTGTTTAATTGACAACCAACAACCTCCTCTT
CTTTTTTTTTTTGTTGTTTAAAAAAAAAAAAGTTTATTCATCCTTTTTTT
CTTTTTTTTTACATTATTTTTTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_b06.b1 MSMg01no051_b06.b1 CHROMAT_FILE:
MSMg01no051_b06.b1 PHD_FILE: MSMg01no051_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:15 2005
         (415 letters)



>mm_chr5_71372480_71373294
          Length = 815

 Score =  630 bits (326), Expect = 0.0
 Identities = 390/428 (91%), Gaps = 30/428 (7%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcacattcctatgtacaaagaaggtttctgaaagctcagtggtggaaggtagaggc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaattcacattcctatgtacaaagaaggtttctgaaagctcagtggtggaaggtagaggc 395

                                                                       
Query: 72  aggaagatttatatgggtttcccccc----catctttctttgacaattggtgagttctag 127
           |||||||||||||||| |||    ||    ||||||||||||||||||||||||||||||
Sbjct: 394 aggaagatttatatggattt----cctggtcatctttctttgacaattggtgagttctag 339

                                                                       
Query: 128 attcaatgtgacacccaatctcagtaaagcaaggtggggagagttaaatgaagacaccta 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 attcaatgtgacacccaatctcagtaaagcaaggtggggagagttaaatgaagacaccta 279

                                                                       
Query: 188 aggtatcttccagactccatagtatacacaaaggtatttgcacatgcagcaaatgcatgc 247
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 278 aggtatcttccagactccatagtatagacaaaggtatttgcacatgcagcaaatgcatgc 219

                                                                       
Query: 248 atacagcacatacaatacatacatacatacatacatacatacatacatacatacata--- 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 218 atacagcacatacaatacatacatacatacatacatacatacatacatacatacatatgt 159

                                                                       
Query: 305 -catacatacatacgtacatacatatacacacacacacacac----------------ct 347
            |||||||||| ||  ||| ||| | ||||||||||||||||                ||
Sbjct: 158 acatacatacacac--acacacacacacacacacacacacacacacacacacacacacct 101

                                                                       
Query: 348 atccatacacaaaagagaatattcgttgtatggatttcatagtaggcccctggaagacca 407
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 100 atccatacacaaaagagaataagcgttgtatggatttcatagtaggcccctggaagacca 41

                   
Query: 408 ctccagag 415
           ||||||||
Sbjct: 40  ctccagag 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)