BAC Information

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BAC

Clone NameMSMg01-051G23
Chromosome5 (Build37)
Map Location 57,117,721 - 57,117,944
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051G23.T7 (MSMg01no051_g23.b1)MSMg01-051G23.TJ (MSMg01no051_g23.g1)
ACCAG280194AG280195
length1,2881,369
length of high quality
(start - end)
---224 (137 - 360)
definitionCHROMAT_FILE: MSMg01no051_g23.b1 PHD_FILE: MSMg01no051_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:07 2005CHROMAT_FILE: MSMg01no051_g23.g1 PHD_FILE: MSMg01no051_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTATGTGGTCATTGGGCGCTATAGACTACTATAGGGAGAGGATCCGC
GGAATTCTCCTCTGAAGAAAAGACTTTTAGAGCCCCGNNGNNNANNANGA
GANNNNNGGGNACCCTTTTAAAACCGCGCNAGNCACCNNGNNANGGAAGN
CNAAAGCGGCAGGCGAAGGCCAGNNGGCGGAACGGCCCCCGGGCAGACGC
GCCCAAGGACCGCCCAAAGCGGAGCCCCCGCCCAGCGNAGGGCGACAGCA
AAGCGCAGAGAGGCAACGCGCAGAGAGGCAACGCGCAGAGAGGCAAGGCG
CAGAGAGGCAGCGCGCAGAGAGACAGGGCGCAGTTTTTGCAACGCGCAGA
CNCACACANNCCCACAGAGGAACACAGGAAAACACAACAGGCACNNCCAG
GCAACTTTTTTTTTTAGGGAGGGCGCGACCANGCAGCCGGGAGAACAAGA
AAACCCCCCCCANANNGCCCCCCCCCCGCCGAACAGAAGGAAAAAAAGAA
AAAAAAAGAGGGGNCCAGCCACACCGGCGACGCGCGCACGGCACCAACAA
CCGACGAACGGACAAAGGCAGAAAAAGCGCCCCGCCCAACAACGAGCCAA
AAGCCGGCACGACAAAGCGCCGAGGCACCGCCCCGACCGAGGCCACGCCA
GAACACAAAGGAGCAGCCAACGAACCACAAACACACAACCAGGCGACAGC
ACGAAACGAAAAGGGAGAACCCGAAGAACAAACAAGAAAGAACCCAAAAA
ACAAGACAAGGCGCCGAAAAACGAGCAACGAGACAACAAAGAGAGAGACG
ACGATTTTTTTTTTTTTTAAGACAAAAACCGAGGCCACAAACACTTGCTT
TTTCTTTTGTTATCGATTTTTTTTTTTATCCTTACCGCAAACAACCTTTT
TTTTTTTTTTTTTTTTTATAGGGCAAAACAAACCCACGGTATTTTTATAC
TGTGTATCCTTTTTTTTTTCATACTGGCCACCACATCTATACCCCATATA
GTTCTTTATCTTTCTTTTTATTTTTTTTCATCCTTTTCTTCTTTTTTTCT
TCAGTATTTCTTCGCGTTATTTTTTACTTATCATTTCTTCTAACTATAAC
TCGGTATATGTCGTATACTATTAATGTTCTTTTTATTACTTTCATTTAGT
ATTACTATTACATGTATCTACATCTATTGTACTTCTTTCCTTTCTTNTCT
TTTATTATCTTTTTGTTAGAGTCCATCTTATGTTGTACTACTTGTTTACG
CTGATTATTTTCTTTCTGACCATTATCGTTTCTTGTTT
TTTTTTTTGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCATATAACTCCCCGNNGGAAAGAANNCCGGNAN
ANNNACCCCTTTAAAATCTCCTACGNCCCCANGCNATTCATTAGAAATTG
TGTTCCAATAAAGCTCAATTTATATCCAGTTCCTTATTTTTAGGCATAAC
TAGTCCATCTTCTTGGGCAATAGGAATCCACGTAGTGGCAATTCTTTTTG
ATTAGTCTATGAGTAGCACCTATATTATTGCTTTCTCTCTTTTTATACTT
TTTCTTCAAGGAACTCCATTTTTATTTTTTTTCTACAGCTGGCAAATTAA
GTCTGAACTGGGTCTTAATTTTGTTAAATAGCATACCTACTATTGTTTTT
TTTTTCACACCACGCCGACGCGACTTTCTCTCATGACTACCCCCCCCCTT
TTTTCTTCCCCCCCGCTAGTATTTTGCTTATTCATAGAAAAAAAAGAGTT
TTGTTTTACTTCTCTTTTTTCTTTCTTTTCTTCTTATCCTTTCTATTTAT
TCCTCTCATTCATCTTCTCTCTCTTCTCTTCCTTCTATCTTTTTTACTCT
GCTTGTATTCCCTCTTCTTTCTTTCTTCTTTTTTTTTCTCTTTACTTTCT
CTTCCCTCTTTCTTTCTTCTCTTTTTCTTTTTTCTTCCTCTTCCTTTCTC
TTTTTTTTTTTCTCCATTTTCCTCTTTTCTTTTTCTTCTTCTCCTTTTTA
TTCTCCTCTTCTTTTTATTCTCTTCTCCTCTTTCTTTCTCTTTTCTTCTT
TCTTTTTTCTTTCACGCTCTCTTTTTCTCTCTTCTATCACCCACCTTTTT
TTTTTTTTTTTTTTTTTTTACCCCCACTCTCTTCATTATTCGTTCCTCTT
TCTTCTTTTCTTATTTATCCCTTTCTCTTTTCTCTTTTTCTTTCTCTATC
ATCTCTCTTTCTTGTTTCTTTTTCTTTTTCTTTTTATCTTACTCTATTTT
CCTCTTCCTTTTTCTCTTTTTCTTCTACTTCTATCTTTTTTCTTTTTTGT
ATCTCTTTTCTTCTTATTTTCTTTCTTTTCATTATTATTTCTCTCTTTTT
TCCTTATTGTCCTCTGCTTCTTTGATTTCCACTTCTCCCTATTTTTCTTT
TCTCTTTNTCTCCCTTTCTCTTCTTTTTCTTCTCTCTTTTCTCTCTCCCT
TTCTTTCTCTTTTTCTTTCTTACTCTTTCTTCTGTCTCTCCTACTCTCAC
TGCTCTTTCCTTTTTTTCCTTATTATTCTCCTATCCTTATTTTATATTAT
CTTTTCTCGTCTCTTGCTATCCTTTCTTCTTCCTACTCTCTACTTTATTT
TTTTCTTTATCCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_g23.g1 MSMg01no051_g23.g1 CHROMAT_FILE:
MSMg01no051_g23.g1 PHD_FILE: MSMg01no051_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:07 2005
         (224 letters)



>mm_chr5_57117521_57118144
          Length = 624

 Score =  348 bits (180), Expect = e-100
 Identities = 213/228 (93%), Gaps = 8/228 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcattagaaattgtgttccaataaagctcaatttatatccagttccttatttttaggca 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 ttcattagaaattgtgttccaataaagctcaatttatatccagttaattatttttaggca 260

                                                                       
Query: 61  taactagtccatcttcttgggcaataggaatccacgtagtggcaattctttttgattagt 120
           || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctagttcatcttcttgggcaacaggaatccacgtagtggcaattctttttgattagt 320

                                                                       
Query: 121 ctatgagtagcacctatattattgctttctctctttttatactttttcttcaaggaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatgagtagcacctatattattgctttctctctttttatactttttcttcaaggaactc 380

                                                           
Query: 181 catttttatttttttt----ctacagctggcaaattaagtctgaactg 224
           ||||||||| ||        |||||||||||||| |||||||||||||
Sbjct: 381 catttttatatt----acaactacagctggcaaactaagtctgaactg 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)