BAC Information

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BAC

Clone NameMSMg01-051H19
Chromosome5 (Build37)
Map Location 61,242,297 - 61,253,453
singlet/doubletdoublet
Overlap geneLOC666597
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051H19.T7 (MSMg01no051_h19.b1)MSMg01-051H19.TJ (MSMg01no051_h19.g1)
ACCAG280229AG280230
length1,2681,276
length of high quality
(start - end)		392 (38 - 429)324 (82 - 405)
definitionCHROMAT_FILE: MSMg01no051_h19.b1 PHD_FILE: MSMg01no051_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:14 2005CHROMAT_FILE: MSMg01no051_h19.g1 PHD_FILE: MSMg01no051_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,242,297 - 61,242,674)(61,253,134 - 61,253,453)
sequence
GTTTTCTTNNNNGACATTCGGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCATAAATGGGGCCTCGTGATACTGAAATCAACTGGTCATCATTC
CATCTTTATGAATTATTTTCTCCAGTAATGTAGTCCCTACAATTAATGAC
CATTATCTAATACAAAGGTCTGTCCCATGCAGACTCTCCAGATGTCAATT
CAGTCTCTGTGAGATCCTAGGTTTGTTGATTTTCTTGTGATGGTCTTGAC
CTCTGGTTCCTACAATCTTTCAGCCCCGTCTTCTTCAAAATATCTGAAGC
TCTGACTAATGCCTGGCTGTGGGTTTCCATCAGTTCCTTTAAGAATCCTC
TCTGATAACAACTGGGTCAGTAGAGCAGAATATTATTAGGAATCACCTCA
TTGATGTGTGTGTGTGTGCGTGTGTGTGTGTGTTTTTTTTTCTTTTTTTC
CCCTTTTTTTTTTTCCCTCCTCTCTCTTCTTCTCCTTTCTCTTTCAATAT
CTTTTTTTTTTTTTCTTTCTTTTTCTTCTCTTTTTTTTTTTTTTTTTTTT
TTTTCTTTCTTTTTTTTTTTTTTCTTTTTCTTTCTTTTTTCTTTTTTCTT
TTCTTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTCTTTTTTCT
ATTTTCTCTCTTTTTTTTTTTTTTTTTCTTCTTTTTTTTTTTTTCTTTTT
TCTTCTTTTTCTCTTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTTT
TATTTTTTTTTTTCCTTTTTTTTTTTTTTTTATTTCTTCTTTTTTTTTTT
TTTTCTCCTATTTTTTTTTTTCTTCTTTTTTTTCTTTTTTTTCTCTTTTT
TTTTTTTTTTTTTTTTTATTTCTTTTTTTTCTTTTTTTCTTTCTCTTTTT
CTTTTCTTCTTTTTTCTTTTTTCCTCTTCTTTTTTTTTTTTATTTTCTTT
TTTCTTTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTCTTTTCTTTTT
TTTATTTTCTTCTTTTCTTTCTTTTTTCTCCTTTTCTTTTTTTTTTATTT
TTCTTCTTTATTTTTCTTTTTTCTTCTTTCTTATTTACTTTTATTTCTAT
TTTCCTTTTTTCTTCGTTTAATTTTTTTTTTTTTTTTTATTCACTTTTTT
TTTTTGTTTTTTATTTTTTTCTTTCTTTTTTTTTCTTTTTTGCTTTTATT
TGTGTTTTCTTTACTTTTCTTTTTTTATCTTTTTTTTATCCTCTCTTTTT
TCTCTCTTTTATTTTTTC

NTATTTTTTTTNNAAAGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACATGCCATATACAACA
AAATGAAAATGTTATTCAGAGGAAGCAGTAAGAATTCCTACCATCAAGAA
TCTGCAGTGTCATCTGCCTTCCAGACACTTTAGAAGCTTTAATTATTAAA
CAACAAGTTAATGAGAAAAGAGTTAAGGCATAGAGATATTTCTTTGTGAG
AGAAAGTGCTTGGTTTAGCTGGATCACACTGTGTCCAAAGCGAGATGGTT
ACAAAATAGAATAGACTGTTTGACATCCAGTAATAATGACTGTTTGACAT
CAGGAACTTTGAGTGGTCAGTACAAAAAATATAGTGTAGTTAAAGGATAC
TTGAGTAGATGTTAGTGTCAGAAAGTGTACAAAGTTAAAAATGGCTCTGA
TGAGCTGCATAACATCATACCTGTACTTGAACAGACCTCATATACATGTC
TTAAGCTTTGTCTATCTGTACCTTCATATCTGATGATGTATTTGTTTGTT
TTATCCCTCTTCTGGTTCTCTTTTTTTTTTTATTTTTCTTTTTCTCTTTT
TTTCTTCTCTGTTTTTTCTTCTTTTCTTTGTATCTTTTTTTTTTTTTCTT
TTTTCTCTTATATCTTTTTCTTCTTCTTTCTTTTCTTCTTTCCTTCTTTT
TCTTCTCTTTTTTATTTCTTTCTTTCTTACTTTTCTTTTTTTTTTCTTAT
TTTTTTCTCTTTCTTTCTTTTTTCTCTTTTTTTTTTCTTCTTCCTTTTTT
TTTCCTTTTTTTTTTTTTTTTCTCTTTTCTTTTTTTTCTCTTTTTTTCTT
TCTTCTTTCTTTTTTTTTCTTTTTTTCTTTCCTCTCCTGTTCTTCTCTTT
TTTTCTTCTTTTCTTTTTTTTTTTCTCTTGTTCTTTCTTTCTCTTCTTTT
TTCTTTTTTTTTTTTCCTTTCCTTTTTTTCTCTTCTTCTTTCTTTTTTTT
TCTTTCTCTTTCTTTCTTTCTTTTTTTCTTTCTTCTTTTTTTTTTCTCTT
TTCTTCCATTTTTATTTTTTTTTTTTTTTTTCTTCTTTTTTTTTTTCTCT
TTTCTTCTTTCTCTCTTTCTTTTTTTCTTCTTCCTTTTTTTTTTTTTCTT
TCCTTATTTCTTCTCTTTTTTTCTTATTCTTTTTCTCTCTTTTATTCTTT
TTTTCTTTCCCCCCGTTTTTTTTTAGTTTTTTATTTTTTTTTTTCCCCAT
TTGTTTTTATATTTTGTGATTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_h19.b1 MSMg01no051_h19.b1 CHROMAT_FILE:
MSMg01no051_h19.b1 PHD_FILE: MSMg01no051_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:14 2005
         (392 letters)



>mm_chr5_61242083_61242874
          Length = 792

 Score =  685 bits (354), Expect = 0.0
 Identities = 372/378 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattcataaatggggcctcgtgatactgaaatcaactggtcatcattccatctttatga 74
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattcataaatggggcctcgtgaaactgaaatcaactggtcatcattccatctttatga 274

                                                                       
Query: 75  attattttctccagtaatgtagtccctacaattaatgaccattatctaatacaaaggtct 134
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 275 attattttctccagtaatgtagtcactacaattaatgaccattatctaatacaaaggtct 334

                                                                       
Query: 135 gtcccatgcagactctccagatgtcaattcagtctctgtgagatcctaggtttgttgatt 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtcccatgcagactctccagatgtcaattcagtctctgtgagatcctaggtttgttgatt 394

                                                                       
Query: 195 ttcttgtgatggtcttgacctctggttcctacaatctttcagccccgtcttcttcaaaat 254
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 395 ttcttgtgatggtcttgacctctggttcctataatctttcagccccgtcttcttcaaaat 454

                                                                       
Query: 255 atctgaagctctgactaatgcctggctgtgggtttccatcagttcctttaagaatcctct 314
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 455 atctgaagctctgactaatgcctggctgtgggtttccatcagttgctttaagaatcctct 514

                                                                       
Query: 315 ctgataacaactgggtcagtagagcagaatattattaggaatcacctcattgatgtgtgt 374
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctgataacaactgggtcagtatagcagaatattattaggaatcacctcattgatgtgtgt 574

                             
Query: 375 gtgtgtgcgtgtgtgtgt 392
           ||||||| ||||||||||
Sbjct: 575 gtgtgtgtgtgtgtgtgt 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no051_h19.g1 MSMg01no051_h19.g1 CHROMAT_FILE:
MSMg01no051_h19.g1 PHD_FILE: MSMg01no051_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:14 2005
         (324 letters)



>mm_chr5_61252930_61253653
          Length = 724

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   atgccatatacaacaaaatgaaaatgttattcagaggaagcagtaagaattcctaccatc 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 524 atgccatatacaacaaaatgaaaatgttattcagaggaagcagtaagaattcctattatc 465

                                                                       
Query: 65  aagaatctgcagtgtcatctgccttccagacactttagaagctttaattattaaacaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aagaatctgcagtgtcatctgccttccagacactttagaagctttaattattaaacaaca 405

                                                                       
Query: 125 agttaatgagaaaagagttaaggcatagagatatttctttgtgagagaaagtgcttggtt 184
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agttaatgagagaggagttaaggcatagagatatttctttgtgagagaaagtgcttggtt 345

                                                                       
Query: 185 tagctggatcacactgtgtccaaagcgagatggttacaaaatagaatagactgtttgaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tagctggatcacactgtgtccaaagcgagatggttacaaaatagaatagactgtttgaca 285

                                                                       
Query: 245 tccagtaataatgactgtttgacatcaggaactttgagtggtcagtacaaaaaatatagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tccagtaataatgactgtttgacatcaggaactttgagtggtcagtacaaaaaatatagt 225

                               
Query: 305 gtagttaaaggatacttgag 324
           ||||||||||||||||||||
Sbjct: 224 gtagttaaaggatacttgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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