BAC Information

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BAC

Clone NameMSMg01-051M01
Chromosome5 (Build37)
Map Location 130,955,697 - 130,956,014
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneSfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051M01.T7 (MSMg01no051_m01.b1)MSMg01-051M01.TJ (MSMg01no051_m01.g1)
ACCAG280422AG280423
length1,2662,101
length of high quality
(start - end)
318 (84 - 401)---
definitionCHROMAT_FILE: MSMg01no051_m01.b1 PHD_FILE: MSMg01no051_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:52 2005CHROMAT_FILE: MSMg01no051_m01.g1 PHD_FILE: MSMg01no051_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTGGGAAGCTTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAA
TTCCCCCAGCAAGGGATGACCGTTTGGCTTGCTGGTAAGTACCTGCCTAG
CATCCACCAGCCCTGGGATGGATACTTATCCCCCGTGCCAAAGCCCTGTA
TTTGTTCCTCAGCTCTCAAAAGAGAGGAGGAATCGGTGTAGAAGACAAAC
AAGCTATTCTAGCCGACAGTCGGTTGTTAACACTTGCCCTTGAAGGTCTC
CAGGCAAGGTTCTCACTTCCAAGGTCAGATGTGAGCGGTGTGGGTCACCC
CATCTCTGGCCTTGTGGCAGCCTTGGTCTTGTCCATTAGCTCCCTGCAGC
TATCAACCTCTTCAGCTGTTAAATTCATGCTAATTTTTCTGTAGCTTTAA
ATTTTTTATAGGCCCATAGTACTGCATGTGGACAGCTCCACAGGTACACC
ATTGCTGTGAATTCTTTGTTTAGCTATAACTATTACCTATATTTTGGTTC
ATTTCTTTCACCAATCGAGATACATTATATCTCGTATGTACACATATATA
TGTATATATTATATATATTGACAATACATGCCTGATTATGTTTTTCTGTT
TCTTTTTCTTTTTTTTTTTTCCTCTTTCTTTATCTTCTCTTTTTTTCTTC
TTTTCTTCTTCTTTCTTTCTTTTTTTTTTTCCTTTTTTTCTTTTTTACTT
TTTTCCATTCCTCTCTTTATTTTTTTTTATTTTTCTCTTTTTATTTTTTT
CTTTTTATCCTTTTTTTTTCTTCATTTTCTCTTTTTTATTATTTATTTTT
CTTCTTTTTTTTTTTATCCTTAAATCTATTACTCTTTTTTTCCCTAGATA
ATTTTTTATTTTTTTTATTTATTTTTTCCTTTCCCTTTTCATTTTTTTTT
TTTAATTTTTTTCCCTTTTCTTTCTTCTCTTCTTTTTATTATTATCTTCT
TTTCTTATCTTTTCTTTCTTTTTCTATCTTTCTTCTCCCCTTTCCTCATT
ATTATCTTTTCTTTTCTTTTTTTTTCTATTAATCTTTCTCATTTTTTATC
TCTTTTGACTATTTCTCTTTATTCTTCTTTTCCTTTCTTTCTTTCACTTA
TCTGCTTTCTCTATTTCTTTTTCTATTTATTTCTTCTCTATTCTTCTTTC
TTCTCCTTTTTCTCCTCTTCCTTTATATCCTTTTTTCTTCTATCTCCTAC
TTTAATTATCTTTTGCTTTCTTTTTTCTTTCCCTTATTATCTTCTTTTTC
CTCTTTATTTTTTTTG
AGAGGGGATAATAATTAAGAGAGAGGAGGGAGGAGGGGGGAATGGAATGG
AAAGATATAAAATTGAAAGAAGGAGAGAGAAAAGGGAGAGGGGAGAGGGG
GGGAGAACACCCCTAAAAAAAGGGGGGGGGNTGNNNNNNNNNNNNNNNTT
NTTNNNTTNTNNNTTGNTGGGGGGGCCCCCAAAAGAGAGAGGGGGGGTCG
CCNNNNNNCACACCACACCATTGGAGGGGGAGGGGGGGAGGAGGAGGGGG
GGGGGGAAGGAGGGGAAGGGAGGGGGGGGGAGGAGGGGAGGAGGGGAAGC
TCGGGGGAGAGAGGGGGGGGAGGGGGGAAAGAGGAGAGAGGGAAAGTGAT
GGGAAGGGGGGGGGGGGGGGGGAGGGGGGAAGAGGAGGGGAGGGAGAAGA
GGGGAGGGAGGGAGGAGGGGGAGAGAAGAGAGGAGGGGGGGAGGGGAGGA
GGGGGAAAGGAGGGGAGGAGAGGCGAGAAAGAGGAAGGAGAGAGAGAGAG
GGGAAGAGAGGAGAGGAGAGGAGGGAGAGGGAGGGGTTGGTTTGGGAGGG
GAAAGGGAGAGAGAGAGGGAGAGGAAGAAGGGAGGTGGAAGGAGTGGTAG
AGGGAGGGAGAGGGAGAGGGGAGGAGGATAGAGAGTGTGAGAAGGAAGGG
GAGGTGGAAGGGAGAGGGGTATGTTTTTTGTGTTGAGGGAGAAGGGGGGG
GTGTGAGGGGAGGGTAGGAAGGGGAGAGGGGGGGGGGGGGAGGGGGGGGA
AGAGGGAGGGAGGATGTGTGGGATAGGGAAGGGAGGGGGGGAGAGAGGGA
GAGGGAGGAGAGGAAGGAGACGGATGAAGAAGGAGACAGGGGGGTGGGAG
AGAGAGGGGGGGAGAGGAGAGAGAGGGGGGAGGAGGGAGAAGGGGAGAGA
GGGGGGGGTGGGAGGGGGAAAGGTGGGGGGAAGAGGGAGAGGAGGGGGGG
CGGGGGGGAGAATGGGGGGAGGGAGAGGGGGAGAGGGGGGAAGGGGGGAG
GAGAGGAGGGAGGGGGGGAGGGAGGGGGAGGAGGAGAGGAGGAGAGGAAA
GGGGGGGGTAGGGGAGAAAGTGAGAGGGAGAGAGTATGAAGGGGAGGGAG
GGGGGGGAGAAAGGAGGGGGGAGAGGGGAAGAGATAGGGAGAAGGGGGAG
AGGAGGGAGAGAGGTACAGGGGAGAAAGGCAAGGGGGGGGGGGAGCGGGG
GGGGCAGGAGGAGGGAGGGGAAGGGGAGGGGGAGAGGGAGAGAGGATGAG
AGGGGAAGGGGAGAGAGGAGAGGGGGGGGGAAGGAGGAGGAGAGGGAGGG
GAGGAGAAAGTAGAGGNGTGAAGGTGAGGAAGGGGGGAGAGAAGAGGGGA
AGAGGGAGGAAGGAGAGAGGAGGAGAGGGGAGGGGAGGGGAAGAGAGAGG
AAGAGAGAGGGGGAGATGAGAGGAGAGGAGGGAGAGGACGGAGATAGGGA
GAGGAGAGAGGGAAGGGGAGAGGGGGTAAGAGGATAGAGAAAGGAGAAGG
GAGGAGAATGAAGGAGGGGGAGTGAGAAGGGAGGAGAGGACAGGGGAAGA
GGAGAGATGGGGAGGGGAAGAGGGGTGAGGAGGGGGGGGAGGAGTGTCAG
GAGAGGAGAGAGGAGGGGAGAGAGGAGGCAGGAGGAGAGGAGGAGGAGAG
AGAAGTGGGGTGGAGGGAGAAGAGAGGGGGTGGGAGAGGGAGGTAGAGGT
GGAGAAGGAGAAGGGGAAGTGGGAAGAGATGAAGGGAGGAGAGATAGGGA
TGAGTGATGGGGAAGAGGGAGAGGATGAGAGANCGAGAGAAGAGAGAGGG
TGGTGGAAGAATGAAGAGGTGATGGAGGGAGAGGGTGGATATGTGAGAGA
GAGGAGTGTGAGAGAAGGATAGGAGGTGGAGGGAGTGAGGGAGATAAGAG
GAGGAGTGTGATGAGCGANAGAGAGGAGGGCAGGAGAGGAGAGGAGAGAG
GGGAGGATGAGGGAGAGGTGGAGAGGGAGACGAGACGAGGAGAGAAGGTA
GGGGTGAGGAGATGAGGANAGATGAGTAGTGAGAGTGTANGGATCGAGAG
AGAGAGGTGGGCGAGAAGANTGGATGGGAGTAGAGGTGCAGGTGAGAGAG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_m01.b1 MSMg01no051_m01.b1 CHROMAT_FILE:
MSMg01no051_m01.b1 PHD_FILE: MSMg01no051_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:52 2005
         (318 letters)



>mm_chr5_130955497_130956214
          Length = 718

 Score =  536 bits (277), Expect = e-157
 Identities = 308/321 (95%), Gaps = 6/321 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtaagtacctgcctagcatccaccagccctg---ggatggatacttatcccccgtgcca 57
           |||||||||||||||||||||||||||   ||   |||||||||||||||   |||||||
Sbjct: 201 ggtaagtacctgcctagcatccaccag---tgaagggatggatacttatctagcgtgcca 257

                                                                       
Query: 58  aagccctgtatttgttcctcagctctcaaaagagaggaggaatcggtgtagaagacaaac 117
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 258 aagccctgtatttgttcctcagctctcaaaagagaggaggaatcagtgtagaagacaaac 317

                                                                       
Query: 118 aagctattctagccgacagtcggttgttaacacttgcccttgaaggtctccaggcaaggt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagctattctagccgacagtcggttgttaacacttgcccttgaaggtctccaggcaaggt 377

                                                                       
Query: 178 tctcacttccaaggtcagatgtgagcggtgtgggtcaccccatctctggccttgtggcag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctcacttccaaggtcagatgtgagcggtgtgggtcaccccatctctggccttgtggcag 437

                                                                       
Query: 238 ccttggtcttgtccattagctccctgcagctatcaacctcttcagctgttaaattcatgc 297
           ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 438 ccttggtcttgcccattagctccctggagctatcaacctcttcagctgttaaattcatgc 497

                                
Query: 298 taatttttctgtagctttaaa 318
           |||||| ||||||||||||||
Sbjct: 498 taatttctctgtagctttaaa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)