Query= MSMg01no052_b06.b1 MSMg01no052_b06.b1 CHROMAT_FILE:
MSMg01no052_b06.b1 PHD_FILE: MSMg01no052_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:35 2005
(435 letters)
>mm_chr5_120953884_120954718
Length = 835
Score = 826 bits (427), Expect = 0.0
Identities = 433/435 (99%)
Strand = Plus / Plus
Query: 1 tgcaagatcatcgagccccctttactgctgagccatctcccagccccgcaacttcttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcaagatcatcgagccccctttactgctgagccatctcccagccccgcaacttcttttt 260
Query: 61 cctatttgtccatgaatgaagtagtcccaatatgttaatcaggttagcctgagctacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 cctatttgtccatgaatgaagtagtcccaatatgttaatcaggttagcccgagctacaga 320
Query: 121 gttaattccaggctagcctagtacacagtatgagatcccgtctcaaagtaatttttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttaattccaggctagcctagtacacagtatgagatcccgtctcaaagtaatttttattt 380
Query: 181 aaaaagctggatgttggaggacctgtacctgtgcttttgaggtctgcaaaatagtctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaagctggatgttggaggacctgtacctgtgcttttgaggtctgcaaaatagtctgga 440
Query: 241 ataaagagtgagaatctgtctcaaaatgtacacaaagagaggcagtgattggcacttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaagagtgagaatctgtctcaaaatgtacacaaagagaggcagtgattggcacttcaa 500
Query: 301 ccaatgcaggtgtcagaccttcaaccagcagccccaggccccagaagccaagggtgtgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaatgcaggtgtcagaccttcaaccagcagccccaggccccagaagccaagggtgtgaa 560
Query: 361 catacaagctgtcctcaacgcagatcaacatctttggtcaagttgctggccaactttgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catacaagctgtcctcaacgcagatcaacatctttggtcaagttgctggccaactttgcc 620
Query: 421 tctggccaaccagtg 435
||||| |||||||||
Sbjct: 621 tctggtcaaccagtg 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_b06.g1 MSMg01no052_b06.g1 CHROMAT_FILE:
MSMg01no052_b06.g1 PHD_FILE: MSMg01no052_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:35 2005
(351 letters)
>mm_chr5_121023224_121023974
Length = 751
Score = 464 bits (240), Expect = e-135
Identities = 284/310 (91%), Gaps = 21/310 (6%)
Strand = Plus / Minus
Query: 54 aaggctgctgtggacagtccaaagcagccctatatccccacatctggaattaaagtagaa 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 747 aaggctgctgtggacagtccaaagcagccctatatccccacatctggaattaaaacagaa 688
Query: 114 acacattcttatagtcttatagtctctctctctctctctctctctc--tctctctctctc 171
||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct: 687 acacattctta---tc------tctctctctctctctctctctctctgtctctctctctg 637
Query: 172 tc----------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaagaaa 221
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaagaaa 577
Query: 222 tcaaaattccagaattctcactacaatgtgggagaaaggcctctaccctctaccccaggg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tcaaaattccagaattctcactacaatgtgggagaaaggcctctaccctctaccccaggg 517
Query: 282 tcttttccttcagcaaacacttgtgagccaccttggccaggtgacagagaaggaactggt 341
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ccttttcctttagcaaacacttgtgagccaccttggccaggtgacagagaaggaactggt 457
Query: 342 ggtgacccca 351
||||||||||
Sbjct: 456 ggtgacccca 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
