Query= MSMg01no052_d12.b1 MSMg01no052_d12.b1 CHROMAT_FILE:
MSMg01no052_d12.b1 PHD_FILE: MSMg01no052_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:46 2005
(449 letters)
>mm_chr5_116708219_116709068
Length = 850
Score = 810 bits (419), Expect = 0.0
Identities = 440/447 (98%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 4 gaattctctagagtatcctcaaccactgattcttttctctcaa-gacttggcaccatacg 62
||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 gaattctctagaggattatcaaccactgattcttttctctcaaagacttggcaccatacg 263
Query: 63 ggcttgaccttccagaggagagaggcttctgcaagatgcctgatgggtaatggcagcagt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggcttgaccttccagaggagagaggcttctgcaagatgcctgatgggtaatggcagcagt 323
Query: 123 gggcatggactgtggcataattgcattccgcctgtctcctacatttttctgggttgggca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggcatggactgtggcataattgcattccgcctgtctcctacatttttctgggttgggca 383
Query: 183 ccatttgtttcaaagctcctgtcgtgtggccattaaatcaccgtttgctctgacagtgtc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatttgtttcaaagctcctgtcgtgtggccattaaatcaccgtttgctctgacagtgtc 443
Query: 243 atttctgtaacaccctgtagggagcaggctgcagtgtctctggatctggaacgctgccat 302
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 atttctgtaacaccctggagggagcaggctgcactgtctctggatctggaacgctgccat 503
Query: 303 ttggtcatcatactgtctccaaaggcgctccttggatgcggctgaacgagggtcccccag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggtcatcatactgtctccaaaggcgctccttggatgcggctgaacgagggtcccccag 563
Query: 363 atacactgctcctggagcccaccagtgctctgtgcatttgcaaagaggaattatcctggc 422
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 atacactgctcctggagcccaccagtgctctgtgcatttgcaaagtggaattatcctggc 623
Query: 423 tggggagagtgcccactaggactgatt 449
|||||||||||||||||||||||||||
Sbjct: 624 tggggagagtgcccactaggactgatt 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 850
Length adjustment: 10
Effective length of query: 439
Effective length of database: 840
Effective search space: 368760
Effective search space used: 368760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_d12.g1 MSMg01no052_d12.g1 CHROMAT_FILE:
MSMg01no052_d12.g1 PHD_FILE: MSMg01no052_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:46 2005
(292 letters)
>mm_chr5_116812586_116813277
Length = 692
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 1 tattt-aaattaaactcatgttttcccctgctcagttagactctcctggaagcatcctta 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tatttaaaattaaactcatgttttcccctgctcagttagactctcctggaagcatcctta 552
Query: 60 tagacacattcagggtatgcttatgatgctaagtaccataaaggtgacaaagttagccat 119
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tagacacattcagggtacacttatgatgctaagtaccataaaggtgacaaagttagccat 492
Query: 120 catggtggggatttcagcaactcccgggtaaagctatatagcaagacgggctgctttagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catggtggggatttcagcaactcccgggtaaagctatatagcaagacgggctgctttagc 432
Query: 180 accatagacacaactttctggagacatgcttttactcttcccgtgggagtgtctatgaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 accatagacacaactttctggagacatgcttttactcttcccgtgggagtgtctatgaac 372
Query: 240 gacgaatctgaatcctaggatgggtacggctgacttcttattttaggact 289
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gacgaagctgaatcctaggatgggtacggctgacttcttattttaggact 322
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
