XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTTT
GTTCTTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGT
CCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCTCCTATCCGAT
TTGGGATAGGTAAAGATCCTTTCCCACTCTGTTGGTGGCCTTTTTGTCTT
ATTGACGATATCTTTTGCATTGCAGAAGCTCTGCAATTTTACGAGGTCCC
ATTTATTGATTCTCGATCTTACAGCAGAAGCCATTGCTGTTCTATTCAGG
AATTTTTCCCCTATACCCATATCTTTGAGGCTTTTCCCTACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAG
ATTTTAACTTAGTCAAGGAGATAGAAATGGATCAATTCACAATCTTCTAC
ATGATAACAGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCCTTT
TTCCACTGGATGGCTTTAGCTCCCTTGTCAAAGATCAAGTGACAATTAGT
GTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTTGTC
TGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAC
AGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAT
GAGAGTTTTTGC

ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAAAGTCCAGACCCATGTGTGCCAATATCTCA
ATTTCTACAGCAAGTCTTATGGGTAAAATTCAGACCATAAAGGAAGATGT
AGTTTCCACCATTTGGTAGAGAAAACTAAAAGGTATTTATATATTTATGG
TTTTATTTTTAATTTAAAGCTACCATGTAGCATGAAGTCTAACATTAAAT
AAGGAATATTTGACTTTATCATTGTTTTATTTTTAAAAAAACTTTATGAG
ATAAGATACTGACTTTTATAACTACACTGAGTTTTTTTCTTCCAAATTAT
TTCAAATTAGGATCTAAACTTAAGTTCACACAAATGTATAAGAAAAATGT
AAAGACTCTGTTAGAAGCTTAAACACAAGTTATATATAAAGAGGACCAAT
TTACCATATAAGTTTCAGTAGAAATAGTCTCCAAATATTCTGAGGATAAG
ACCATGAGATCCAGTATTCTAAGCTAGACATTAACACTGACCTCAGAATT
TGATTCTAAAATGAAGATGTTTTATGCAATTGCAAGCTAATCCAAAGGCA
TCCTCATAAACCTCACCTCTATCAGAAAAGGTTACAGTTATTCTTTGGCT
AAATAGGGCTTTTTGTCCATAAAACCTCACTTTGTCGAGTTAAAATTATA
TTGGATTTAACTTAGA

Query= MSMg01no052_i12.g1 MSMg01no052_i12.g1 CHROMAT_FILE:
MSMg01no052_i12.g1 PHD_FILE: MSMg01no052_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:11 2005
         (638 letters)



>mm_chr5_48140637_48141674
          Length = 1038

 Score = 1180 bits (610), Expect = 0.0
 Identities = 631/638 (98%), Gaps = 2/638 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaagtccagacccatgtgtgccaatatctcaatttctacagcaagtcttatgggtaaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 acaaagtccagacccatgtgtgccaatgtctcaatttctacagcaagtcttatgggtaaa 260

                                                                       
Query: 61  attcagaccataaaggaagatgtagtttccaccatttggtagagaaaactaaaaggtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcagaccataaaggaagatgtagtttccaccatttggtagagaaaactaaaaggtatt 320

                                                                       
Query: 121 tatatatttatggttttatttttaatttaaagctaccatgtagcatgaagtctaacatta 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatttatggttttatttttcatttaaagctaccatgtagcatgaagtctaacatta 380

                                                                       
Query: 181 aataaggaatatttgactttatcattgttttatttttaaaaaaactttatgagataagat 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aataaggaatatttgactttatcattgttttattttt-aaaaaactttatgagataagat 439

                                                                       
Query: 241 actgacttttataactacactgagtttttttcttccaaattatttcaaattaggatctaa 300
           ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 440 actgacttttataaccacactgag-ttttttcttccaaattatttcaaatcaggatctaa 498

                                                                       
Query: 301 acttaagttcacacaaatgtataagaaaaatgtaaagactctgttagaagcttaaacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acttaagttcacacaaatgtataagaaaaatgtaaagactctgttagaagcttaaacaca 558

                                                                       
Query: 361 agttatatataaagaggaccaatttaccatataagtttcagtagaaatagtctccaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agttatatataaagaggaccaatttaccatataagtttcagtagaaatagtctccaaata 618

                                                                       
Query: 421 ttctgaggataagaccatgagatccagtattctaagctagacattaacactgacctcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttctgaggataagaccatgagatccagtattctaagctagacattaacactgacctcaga 678

                                                                       
Query: 481 atttgattctaaaatgaagatgttttatgcaattgcaagctaatccaaaggcatcctcat 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aattgattctaaaatgaagatgttttatgcaattgcaagctaatccaaaggcatcctcat 738

                                                                       
Query: 541 aaacctcacctctatcagaaaaggttacagttattctttggctaaatagggctttttgtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaacctcacctctatcagaaaaggttacagttattctttggctaaatagggctttttgtc 798

                                                 
Query: 601 cataaaacctcactttgtcgagttaaaattatattgga 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cataaaacctcactttgtcgagttaaaattatattgga 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)