XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATCTGATCTCTAAAAATGTGAAACTTATTTGAGATGTTTTGTTTGTTTTT
CTGAGGGTTTCCCTCTGCAGCTCTGGCTTTGGTGGAACTCGCTCTGTAGA
TCAGGGTGGCCTCAAACAGATCTACCTGCCTCTACCTCCCCAGTGCTGGG
ATTAAAGATTGTGTGTGTGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGT
GTGTGCGCATGTGTGTGTTTGTGTGTGCGCGTGCCACCATACCCAGCTCT
AGGCTCTAAATAGAATATCCTGAATTTATTGACAAGACAATTAGCCTGGA
GATTTCGCCAATTCAGAAGGAACGTTGTTTCCTGTACATTCTATACTATA
AATTTGTTTTTGTTTTTCATTTGGCACAGGGTCTTACTATTTAGACCAAA
TTCACAGAAACCTACCTACCACTGCTTCCTCAGTACTAGGATTAAAGATG
CCCTACCATGCCCAGCTTACTTTCCTTTTAATCACTCTGAGATTGAAAAA
CATTCCCTGCTGGGCAGTGGTGGAGCACACCTTTCATCCCAGCTCTTGGC
AGGCAGAGGAAGGCAGATTTCTGAGTTCTAGGCCGGCCTGGTCTACAGAG
TGAGTTCCAAGGCAGTCAGGGGTATACAGAGACACCCTGTCTGGAAAGAC
CAAAAGAAAAG

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCGATGAAGTAGC
TGGATATAAAATTAACTCAAACAAGTCAGTGGCCTTTCTCTATACAAAGA
ATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCTTTCTCAATAGTC
ACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTCAAAGA
TCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATC
TCAGAAGATGGAAAGATCCCCCATGCTCATGGATTGGTAAGATCAACATT
GTAAAAATGGCTATCTTGCCAATAGTAACTACATATTCAATGAAATCCCC
ATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCAA
ATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGG
ATAAAAGAACCTCTGGTAGAATCACCATGCCTGACCTAAAGCTTTACTAC
AGAGCAATTGTGATTAAAAACTGCATGGTGCTGGTATAGTGACAGACAAG
TAGACCAATGGAACAGAATTGAAGACCCAGAGATGAACCCACAAACCTAT
GGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGA
CAGCATTTTCAA

Query= MSMg01no052_i16.b1 MSMg01no052_i16.b1 CHROMAT_FILE:
MSMg01no052_i16.b1 PHD_FILE: MSMg01no052_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:11 2005
         (653 letters)



>mm_chr5_8400502_8401554
          Length = 1053

 Score = 1050 bits (543), Expect = 0.0
 Identities = 635/695 (91%), Gaps = 48/695 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatctgatctctaaaaatgtgaaacttatttgagatgttttgtttgtttttctg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaattcaatctgatctttaaaaatgtgaaacttatttgagatgttttgtttgtttttctg 808

                                                                       
Query: 65  agggtttccctctgcagctctggctttggtggaactcgctctgtagatcagggtggcctc 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 807 agggtttccctctgcagctctggctttggtggaactcactctgtagatccgggtggcctc 748

                                                                       
Query: 125 aaacagatctacctgcctctacctccccagtgctgggattaaagat-------------- 170
           |||||||||||||||||||||||||||||||||||||||||||| |              
Sbjct: 747 aaacagatctacctgcctctacctccccagtgctgggattaaaggttgtgtgtgtgtgtg 688

                                                                       
Query: 171 ----------tgtgtgtgtgtgtgtgc--------------------gtgtgtgcgtgtg 200
                     |||||||||||||||||                    |||||||||||||
Sbjct: 687 tgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgcgtgtgtttgtgtgtgcgtgtg 628

                                                                       
Query: 201 tgtgtgtgtgtgtgtgcgcatgtgtgtg--tttgtgtgtgcgcgtgccaccatacccagc 258
           |||||||||||||||| |  ||||||||  |||| |||||||||||||||||||||||||
Sbjct: 627 tgtgtgtgtgtgtgtgtg--tgtgtgtgtatttgcgtgtgcgcgtgccaccatacccagc 570

                                                                       
Query: 259 tctaggctctaaatagaatatcctgaatttattgacaagacaattagcctggagatttcg 318
           ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 569 tctaggctccaaataggatatcctgaatttattgacaagacaattagcctggagatctcg 510

                                                                       
Query: 319 ccaattcagaaggaacgttgtttcctgtacattctatactataaatttgtttttgttttt 378
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccaattcagaaggaatgttgtttcctgtacattctatactataaatttgtttttgttttt 450

                                                                       
Query: 379 catttggcacagggtcttactatttagaccaaattcacagaaacctacctaccactgctt 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catttggcacagggtcttactatttagaccaaattcacagaaacctacctaccactgctt 390

                                                                       
Query: 439 cctcagtactaggattaaagatgccctaccatgcccagcttactttccttttaatcactc 498
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 389 cctcagtactaggattaaagatgccttaccatgcccagcttactttccttttaatcactc 330

                                                                       
Query: 499 tgagattgaaaaacattccctgctgggcagtggtggagcacacctttcatcccagctctt 558
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgagattgaaaaccattccctgctgggcagtggtggagcacacctttcatcccagctctt 270

                                                                       
Query: 559 ggcaggcagaggaaggcagatttctgagttctaggccggcctggtctacagagtgagttc 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggcaggcagaggaaggcagatttctgagttctaggccggcctggtctacagagtgagttc 210

                                              
Query: 619 caaggcagtcaggggtatacagagacaccctgtct 653
           |||||||||||||||||||||||||||||||||||
Sbjct: 209 caaggcagtcaggggtatacagagacaccctgtct 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)