XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
CCCAGGTCCTTAGAGTCTCATGCTCAGGTACAAAGGCCAAAGCTGCTTAT
GGGTAAGAATAGCTGAGTACATATATATGTACACACACACACATATATGT
GTATATATATATATATATATATATATATATATATAATTTTAGAGAGGTAT
ATTTGCTTTGTATCTTCCCAAAGTAAATTTTGTGAGATGTAGAATAATTA
CATACAGGGGAAAATTTGAGAGTCCATTTTTTTTTTTTTTTTTTGTCTAA
CAGGACACAGCTTAAATGAGAGAAAAACCACCTCAGCTGTATACCAGCAA
ACAGGAACTACAATTTTGGTCTACATTTTCCTCTTCCTCATCCCACCTTT
TCTTCCTTCCTAAATTTCTGGCCATAAAATATTTCCTTTAAATTGAGATT
TCTGTATACTGACACAAGAAGGCCCACAGCAAACTGGCAGTAAGCATTCA
CTACAGGCAGCTGCCTTGAAAAAAACAAACGGTAGTGTAATTTACCCTGA
AAAACACCCAGCTAAAGCTGTTTTTGTGGAAGAAGCTGAGCAGCTTCTAT
TAATGCTAATTGAAATCCTCATATCCACACATACCATGCATAAAATTTAC
TTCTACAGTTTTGCTTTCCACCTCGGCACTGCAGTAGGTCCAGTGCCAAA
GGAGCAGCTTTTTAACTGGAC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTTCTTTTTGCAGCTCACAGGCCATCTGCAGGG
AAGTCAGGACAGGAACTCAGGGCAGGAACCTGGACACAGGAACTAAAGGA
GAGGCCAGGGAGAAACGCTACTAACTGACTTATTCTCTAACACTGGCTCG
GCTTGCTTTCTTATAACACCCAGGACCAACTGTCAAGTTGTATAATTGTT
CATGGTGGTCTAGCTCCTCTTGTCAATCATTAATCAAGGAAGTACCCTAT
AAACTTGCCTACCCAAAATCTGATGGAGACATTTTGTCAAATGAGATTCT
CAAGTCTTGTGTCAAAAAGAGCAAAACTAACCAGAAAACCCTGTGTGTAA
TTCACAAGCAAATATTGACATTTTAAATATTGACATTTATTTACTTATTT
GTGTGTGTGTGTGTGTGTATGTGTGTGTATATGTATNGTGTGTGTATGTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTTT

Query= MSMg01no052_o10.b1 MSMg01no052_o10.b1 CHROMAT_FILE:
MSMg01no052_o10.b1 PHD_FILE: MSMg01no052_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:39 2005
         (648 letters)



>mm_chr5_81944206_81945255
          Length = 1050

 Score = 1135 bits (587), Expect = 0.0
 Identities = 641/685 (93%), Gaps = 44/685 (6%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcaagcccaggtccttagagtctcatgctcaggtacaaaggccaaagctgcttatg 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 gaattcaagcccaggtccttagagtctcatgctcaggtacaaaggccaaagctgcttatg 971

                                                                        
Query: 65   ggtaagaatagctgagtacatatatatgtacacacacacac------------------- 105
            |||||||||||||||||||||||||||||||||||||||||                   
Sbjct: 970  ggtaagaatagctgagtacatatatatgtacacacacacacatatatgtatatatatgta 911

                                                                        
Query: 106  ---atatatgtgta--------------tatatatatatatatatatatatatatatata 148
               |||||||||||              ||||||||||||||||||||||||||||||||
Sbjct: 910  tatatatatgtgtatatatatgtatgtgtatatatatatatatatatatatatatatata 851

                                                                        
Query: 149  attttagagaggtatatttgctttgtatcttcccaaagtaaattttgtgagatgtagaat 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  attttagagaggtatatttgctttgtatcttcccaaagtaaattttgtgagatgtagaat 791

                                                                        
Query: 209  aattacatacaggggaaaatttgagagtcca-----ttttttttttttttttttgtctaa 263
            |||||||||||||||||||||||||||||||     ||||||||||||||||||||||||
Sbjct: 790  aattacatacaggggaaaatttgagagtccatttttttttttttttttttttttgtctaa 731

                                                                        
Query: 264  caggacacagcttaaatgagagaaaaaccacctcagctgtataccagcaaacaggaacta 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  caggacacagcttaaatgagagaaaaaccacctcagctgtataccagcaaacaggaacta 671

                                                                        
Query: 324  caattttggtctacattttcctcttcctcatcccaccttttcttccttcctaaatttctg 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  caattttggtctacattttcctcttcctcatcccaccttttcttccttcctaaatttctg 611

                                                                        
Query: 384  gccataaaatatttcctttaaattgagatttctgtatactgacacaagaaggcccacagc 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  gccataaaatatttcctttaaattgagatttctgtatactgacacaagaaggcccacagc 551

                                                                        
Query: 444  aaactggcagtaagcattcactacaggcagctgccttgaaaaaaacaaacggtagtgtaa 503
            ||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 550  aa--tggcagtaagcattcactacaggcagctgccttg-aaaaaacaaacggtagtgtaa 494

                                                                        
Query: 504  tttaccctgaaaaacacccagctaaagctgtttttgtggaagaagctgagcagcttctat 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493  tttaccctgaaaaacacccagctaaagctgtttttgtggaagaagctgagcagcttctat 434

                                                                        
Query: 564  taatgctaattgaaatcctcatatccacacataccatgcataaaatttacttctacagtt 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433  taatgctaattgaaatcctcatatccacacataccatgcataaaatttacttctacagtt 374

                                     
Query: 624  ttgctttccacctcggcactgcagt 648
            |||||||||||||||||||||||||
Sbjct: 373  ttgctttccacctcggcactgcagt 349



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 115 tatatatatatatatatatatatatatatata 146
           ||||||||||||||||||||||||||||||||
Sbjct: 851 tatatatatatatatatatatatatatatata 882



 Score = 62.6 bits (32), Expect = 9e-14
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 117 tatatatatatatatatatatatatatatata 148
           ||||||||||||||||||||||||||||||||
Sbjct: 851 tatatatatatatatatatatatatatatata 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 17
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space:   663520
Effective search space used:   663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)