Query= MSMg01no052_o22.b1 MSMg01no052_o22.b1 CHROMAT_FILE:
MSMg01no052_o22.b1 PHD_FILE: MSMg01no052_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:42 2005
(591 letters)
>mm_chr5_52404905_52405896
Length = 992
Score = 1114 bits (576), Expect = 0.0
Identities = 588/592 (99%), Gaps = 1/592 (0%)
Strand = Plus / Minus
Query: 1 attattcgttt-gccattttctgggccttgggcgtagggctgggtgatgaaggtgatgct 59
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 attattcgtttggtcattttctgggccttgggcgtagggctgggtgatgaaggtgatgct 733
Query: 60 ggagcctgaaacttatgatttggggtgggggagggggtgacaaaatgagagggaggagat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggagcctgaaacttatgatttggggtgggggagggggtgacaaaatgagagggaggagat 673
Query: 120 gcaccattcctaagactaaagctggttacagcccatctctgaggtcagtgcacttcagaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcaccattcctaagactaaagctggttacagcccatctctgaggtcagtgcacttcagaa 613
Query: 180 agagcaggtactgagaagaacacccaagagtacagctttttatgatgctgggactgggct 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 612 agagcaggtactgagaagaacacccaagagtgcagctttttatgatgctgggactgggct 553
Query: 240 gtgaggaattctggaccaattgcaacacagaatgaatgcaagttccaaataggatgtcct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtgaggaattctggaccaattgcaacacagaatgaatgcaagttccaaataggatgtcct 493
Query: 300 ctggctgtccttaaaactttattatgacagaaaactctctcagaagtcaggattgggcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctggctgtccttaaaactttattatgacagaaaactctctcagaagtcaggattgggcta 433
Query: 360 tctgttccttccagactctttgcttcccttcgttcattgagattgaaccacttgcctgct 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 432 tctgttccttccagactctttgcttcccttctttcattgagattgaaccacttgcctgct 373
Query: 420 atgagatctctgtttgtctgagatatatcacagattgtgatttaccgtttcttttttatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgagatctctgtttgtctgagatatatcacagattgtgatttaccgtttcttttttatt 313
Query: 480 tcccatattggaattcacccagtccatgactttggtttgagagaaagattctgttggtgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcccatattggaattcacccagtccatgactttggtttgagagaaagattctgttggtgg 253
Query: 540 ctgccatcttcctggatttctggatgtcggaacccagcttttcagctgattc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgccatcttcctggatttctggatgtcggaacccagcttttcagctgattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_o22.g1 MSMg01no052_o22.g1 CHROMAT_FILE:
MSMg01no052_o22.g1 PHD_FILE: MSMg01no052_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:42 2005
(611 letters)
>mm_chr5_52271310_52272320
Length = 1011
Score = 1151 bits (595), Expect = 0.0
Identities = 607/611 (99%)
Strand = Plus / Plus
Query: 1 tccaggcattggaaagatacctctatgcaaagacaacgccagaggtaagtgagcagcttt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggcattggaaagatgcctctatgcaaagacaacgccagaggtaagtgagcagcttt 260
Query: 61 ctctgaatacacgtctattgtgaggctgaaccaaagggaacctggtgtcatggatgagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgaatacacgtctattgtgaggctgaaccaaagggaacctggtgtcatggatgagag 320
Query: 121 gaagagaggcagatggtgacaagattggaggcacaagtgaagcaggtaaaaccaaggaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagaggcagatggtgacaagattggaggcacaagtgaagcaggtaaaaccaaggaga 380
Query: 181 catcaatagggtgttgtggagatggcaaaggagtcctggaaggggaatataaaagaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcaatagggtgttgtggagatggcaaaggagtcctggaaggggaatataaaagaaaga 440
Query: 241 gcttgctggaacatatggagaatgccacccatagaattttaacatttatttattaaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttgctggaacatatggagaatgccacccatagaattttaacatttatttattaaaaga 500
Query: 301 ctcaataagagaaggacttatgcctaaaggctattacacatgtggtcatagttcatcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaataagagaaggacttatgcctaaaggctattacacatgtggtcatagttcatcagt 560
Query: 361 tcattcatgcacttatgctcttatccattcattcattcattcattcacttaacaaactat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattcatgcacttatgctcttatccattcattcattcattcattcacttaacaaactat 620
Query: 421 gaacatgtgttatatggtagacaattcctagagaaaggtaataaagccttgaacaaaaca 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gaacatgtgttatatggtagacaattcctagaggaaggtaataaagccttgaacaaaaca 680
Query: 481 gacaagacaccaggccttcaggaagcttatattctagtggggagtgaagggaaaatggaa 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaagacaccaggtcttcaggaagcttatattctagtggggagtgaagggaaaatggaa 740
Query: 541 gggaaagttacaggttactgccaatgaacaacaaataagtaaatcagaactcccactgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggaaagttacaggttactgccaatgaacaacaaataagtaaatcagaactcccactgaa 800
Query: 601 tcttgctgtag 611
|||||||||||
Sbjct: 801 tcttgctgtag 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
