BAC Information

Click to search

BAC

Clone NameMSMg01-053F04
Chromosome5 (Build37)
Map Location 37,812,774 - 37,812,944
singlet/doubletsinglet
Overlap geneEvc2
Upstream geneGrpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc
Downstream geneLOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F04.T7 (MSMg01no053_f04.b1)MSMg01-053F04.TJ (MSMg01no053_f04.g1)
ACCAG281568AG281569
length1,089703
length of high quality
(start - end)
---171 (83 - 253)
definitionCHROMAT_FILE: MSMg01no053_f04.b1 PHD_FILE: MSMg01no053_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:12 2005CHROMAT_FILE: MSMg01no053_f04.g1 PHD_FILE: MSMg01no053_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGAAACAAACTAGNTCCTACATGTCAAGCNGNNANNGGCGCNTNANAT
CCAAAAGAAGGGGGGGGTGAGAANTATNGGAATTTTCCACAAAAAAGAAG
GAGAGACACATAGTGAGAAGCACATCACTGCCGCGTACTACGCCCTTTTG
ATCTTTACTCTAATAACGGAGAGACAATAAAATTAAATAACAAGGAAATT
AAGAGATAAAATAAGGATAAGAGACGATGCGTATTATATTTGGTAATGGA
GGCGTCAGCATTTACTTGGTGAAGTTCGCGTCTTGACCTAATACAGCAGC
CGTTTTATTGACACGCAAGAACGCGCAGTAATATAACCCACAACTCTCCA
CCCACATTAATAAAACCCACAGTCCCACCCAGAAACCATTCGCCCATAAG
TAATCGGCAAAGCGTACGACAGAACATGTATAAAAAAATATTCATAGATT
TCCTAGATAGTAAGCGAGAAGGAGACGACGATGGAACTATACAATAATAA
TATAGGAAGAAAGATAAGTACTATGGGACTTACATAGAATATACTGCACT
ACCCGTTTCGCGCCTAGCTAACTCACTTTAACCCCATAGCGCTCTACATA
ATCTGCATCCCAAACCGCGCAGTGCGAACGCGAGTCCATCGGTTATATCA
ACCCACAGCCGCGCCCCTACATAACAGCACCCGCGACAACGAGCATGACG
ACGATATCTCGCCGCGCTCGCGTAGACCCACATTCCGACTCCGCTCTATC
CGTAATATAACGTACAATATATTACGATCGACGCGAATACGAGACGCCAG
GACACGCAGATTCACGAGCAATATAGAGCCGACCGTATTAACTGCGGTAT
TTTCGATGACGAATTACGCACATACTACAACTTCGCCAGACAGCCGCCCC
ATAGCGAATACTAAATACGCAGCGATACACGGATATCGCATAACCATCGA
CCATGACGCGATATAATAATGCCCACTATCGACCGCGACAATACATTCTT
ATGCGCCAAATAGACCACTACACCGTGGTCTACACATTATCTAAAGAACC
TACAGGAGCGCTCNCACCGTCGACGCGCTATCACACCAG
AAAAATACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTGCATTGTGTGTGC
ACCCTGAGGCCAGGGGACACAGCAGTCACCACATGCTGTCAGGACACCAC
CACAGAACTCTCTGCACTGCCTGCCTCCACCTGATAGATGCTGTCTGTCA
CCACCACCCTCCAGGTAGGGATTATCTGTGGACCAGGCCTGAGATTGACA
CTCAGCAAATCTCTCAGGGTTCTAGGTGGCATCCAGCAGCCACCTCATGG
ATGGTGCCCCACGGATTTTTTTGATAATCATATTTTATTCTTTTTTTTTT
TTAAACTGTAACTTGTTCCTTCTGCATCAGGAAACACCAAGTCTGGTGAA
AGGCTTTGGACAGCACATTCCTACTAAATCTGCTGAGTCATGGACTGTTG
ATAATGCTCTGGGCCCGCTTCATGAACGATATCCGATTATTTGGTCAATT
AATTTCCTCCAGTTCGTGTCTCTATTTTTCCTGTCACTTACTCAATTGTT
TTAACTCCTTCCCTATTCCACCTTCTGCTTTTGTTCCTCCTCCCCTTTTT
ATACCTCATCTATAACCCCTTACTCCCCTTCCCTCAAATGCCCCTCCCCC
CCTTACTACATGCTCTTCTCTACTTCCCCCCCCATACCTCCCTTTCCCTC
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f04.g1 MSMg01no053_f04.g1 CHROMAT_FILE:
MSMg01no053_f04.g1 PHD_FILE: MSMg01no053_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:12 2005
         (171 letters)



>mm_chr5_37812574_37813144
          Length = 571

 Score =  308 bits (159), Expect = 2e-88
 Identities = 168/171 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctgcattgtgtgtgcaccctgaggccaggggacacagcagtcaccacatgctgtcag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cacctgcattgtgtgtgcaccctgaggccaggggacacagcagtcagcacatgctgtcag 260

                                                                       
Query: 61  gacaccaccacagaactctctgcactgcctgcctccacctgatagatgctgtctgtcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaccaccacagaactctctgcactgcctgcctccacctgatagatgctgtctgtcacc 320

                                                              
Query: 121 accaccctccaggtagggattatctgtggaccaggcctgagattgacactc 171
           || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaccctccaggcagggattatctgtggaccaggcctgagattgacactc 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)