BAC Information

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BAC

Clone NameMSMg01-054B17
Chromosome5 (Build37)
Map Location 26,978,396 - 26,978,944
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054B17.T7 (MSMg01no054_b17.b1)MSMg01-054B17.TJ (MSMg01no054_b17.g1)
ACCAG282134AG282135
length682709
length of high quality
(start - end)
554 (17 - 570)518 (75 - 592)
definitionCHROMAT_FILE: MSMg01no054_b17.b1 PHD_FILE: MSMg01no054_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:13 2005CHROMAT_FILE: MSMg01no054_b17.g1 PHD_FILE: MSMg01no054_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATCGAGAGAGGATCCGCGGAATTCATATACTTCCCTTTGGGGCA
GCAATGGCCATATCAGAATTTTCAAATAGTCCTGGCTCTTACTTTCAGAC
ATGGAGTTGTAAACAGCTTGGACATATGGTACATTCATGGTGTCACTTAC
CCAGGCACCATCAATTATCTATCACCGCCTTCTCTCACCTAAGCAAACTG
GCTCTGGAGAAGGGTAAGAATGTCTGCTTTGAAAAACTCCAGATCCACAG
TCACGACCAGCACTGTATCTCTCTCTCTCTCTTTTTTAACAAAATTTTAT
TTTTATTTGATTTTCTTTTTTATTAGATATCTTCTTCATTTACATTTCAA
ATGCTATCCAAAAAGTCCCCCTCCCGCTGCCCTGCTTCCCAACCCACCCG
CTCCCGCTTCCTGGTCCTGGCATTCCCCTATACTGGGGCATATAATCTTC
ACAAGACCAAGAGGCCTCGCCTCCCAATGATGACAGACTAGGCCATCCTC
TGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGGTTAGTTCA
TATTGTTCTTCCTCCTATAGGGTTGCAGACCCCTTCAGCTCTTGGGTACT
TTGATAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCCATAGATGACTGT
GAGCATCCACTTCTGTATTTGTCAGGCACTGG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTTCTGTGGTGATTTTAGAGACCT
CTGGTTATATGCCTAGGACCTATATATCTGGATCATGTGGTAGAGCTATT
CCTGGTGTTTTGAGGAGCCCCCCATTGGTTTTCAAAGTGGTTGTACTAGT
TTATAGTTCCACACACACAGTATTTTATATATAATTTTCTTAGAAATTGT
GATTTTGAAGGTTGAATTTTGTGATGTCCATATTGAAATAATTTAGGTTC
ATGATTCTGTTACCTTGTTTGTATTAATCAATGTGTTTATGTTGTCCCAT
CTTTGCATACTTAGGGAAAGCACTAGTTTATAGTGTACAATCTTTCTGAT
ATATAGTTGGATTCATTTTAAAAGATTTTATATAGAACTTTGTTTCATCA
GGAATATTGGTCTATGTTTTCCATTCTCTGTGTATCTATCTGGTTTTGAT
GTCAGGATAATACATGCTTTGTAGAATTAGTTTTCCAGAGTTCCCTCCTT
TTTGATCTGTTGAGATTGCTTGAGACACATTGGTTGTTAGTTCATTAAAA
CTTTGGTAAAACTCAACAATGGAAACAAATACATTTTCTTTGCCAGAAGA
TTCTTATTAGTGATTCATTTTGTTACTAATTATTGATATGTTGAGATGTT
TTGTGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_b17.b1 MSMg01no054_b17.b1 CHROMAT_FILE:
MSMg01no054_b17.b1 PHD_FILE: MSMg01no054_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:13 2005
         (554 letters)



>mm_chr5_26978189_26979144
          Length = 956

 Score =  951 bits (492), Expect = 0.0
 Identities = 535/550 (97%), Gaps = 4/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattcatatacttccctttggggcagcaatggccatatcagaattttcaaatagtcct 67
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcatatacat-actttggggcagcaatggccatatcagaattttcaaatagtcct 266

                                                                       
Query: 68  ggctcttactttcagacatggagttgtaaacagcttggacatatggtacattcatggtgt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggctcttactttcagacatggagttgtaaacagcttggacatatggtacattcatggtgt 326

                                                                       
Query: 128 cacttacccaggcaccatcaattatctatcaccgccttctctcacctaagcaaactggct 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacttacccaggcaccatcaattatctatcaccgccttctctcacctaagcaaactggct 386

                                                                       
Query: 188 ctggagaagggtaagaatgtctgctttgaaaaactccagatccacagtcacgaccagcac 247
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atggagaagggtcagaatgtctgctttgaaaaactccagatccacagtcacgaccagcac 446

                                                                       
Query: 248 tgta--tctctctctctctctttttt-aacaaaattttatttttatttgattttcttttt 304
           ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 447 tgtatctctctctctctctcttttttaaacaaaattttatttttatttgattttcttttt 506

                                                                       
Query: 305 tattagatatcttcttcatttacatttcaaatgctatccaaaaagtccccctcccgctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 507 tattagatatcttcttcatttacatttcaaatgctatccaaaaagtccccctccccctgc 566

                                                                       
Query: 365 cctgcttcccaacccacccgctcccgcttcctggtcctggcattcccctatactggggca 424
           |||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 567 cctgctccccaacccacctgctcccacttcctggtcctggcattcccctatactggggca 626

                                                                       
Query: 425 tataatcttcacaagaccaagaggcctcgcctcccaatgatgacagactaggccatcctc 484
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct: 627 tataatcttcacaagaccaaggggcctctcctcccaatgatgacagactaggccatcttc 686

                                                                       
Query: 485 tgctacatatgcagctagagacacaagctctgggggtactggttagttcatattgttctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgctacatatgcagctagagacacaagctctgggggtactggttagttcatattgttctt 746

                     
Query: 545 cctcctatag 554
           ||||||||||
Sbjct: 747 cctcctatag 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space:   514624
Effective search space used:   514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)