BAC Information

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BAC

Clone NameMSMg01-054J24
Chromosome5 (Build37)
Map Location 123,886,233 - 123,886,826
singlet/doubletsinglet
Overlap geneMlxip
Upstream geneAnapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
Downstream geneLOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054J24.T7 (MSMg01no054_j24.b1)MSMg01-054J24.TJ (MSMg01no054_j24.g1)
ACCAG282509AG282510
length887700
length of high quality
(start - end)
66 (143 - 208)593 (77 - 669)
definitionCHROMAT_FILE: MSMg01no054_j24.b1 PHD_FILE: MSMg01no054_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:51 2005CHROMAT_FILE: MSMg01no054_j24.g1 PHD_FILE: MSMg01no054_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTATTNNNNNNNNNNNNNNNNNNCCCCCCNNNNNNNNNNNNNNNNNN
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAT
CCGCGGAATTCCAGTCCTGCAAGGGTTCCATGATGAGACCGTGTCTCAAA
ACAAAAACCTGGAATATTATGTACAAAGCGCTATGATTTAACATATTGAA
TTCTCGGNCTTCTCCNNAAGGGGTTAAGCCCTCAGGTGTACGCAGTGNTT
AAACTGAAAAACCGCCCTCTTTGTTTTTTTTTTCGGGCNAACGCCCTGCC
TTGAAAAACAAACAACCGCCTTGAAACAATTTTTTTTTCTTAAAGCCCCC
GCACCGGAACAAACCCCCCCCGGGTTTTTTTTTTCACCTGGAAAAAAAAA
AACCGGCCCCCAAAACCCTTTTTTAAAAAATAAAAAAAACTATTCTTCCC
TTACCNNNNNNNNNNNNNNNNNNNNNNTTTNCTATTAATTAAAAAAAACG
GNGGGGGGCNNNATTTTTGGGAAAAAAACACCCCCCCTTTTTTTCCCAAA
CCCCCCCCTTTCTTTCNCCACACCTGGGCCCCCCCCCAAGCCCCCCCTCN
GCGCGCCTTAAAAACCNNAACNAACTNTTTTTCCTTTTTTTTTATTTTTT
TTTAAAAACCGAAANNNNNNNNCCTATTCTATTCCTTATTCCAGGTNTNT
NTANCNCNCACTATAACATTATTACCTCTTCCCCTCCCCTCCCCCACCCC
CCCCCCCCCCTCAACCCCCCCCCCCCCCTTCTTATATAAACAAATTATTT
TTTTTTTCCNCCCACACCACTCTCCCTTCTCTCCCTTTTTTATTTTTTCC
CCCTCCCCCCTCTCTTATTTTTTTTTTTTTTATTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGTTTGCTAACTCCATCCAACA
AAATTGTAAGAGGGGCCTTTGTTGCCCTGTGAACTTCCTGTTTTGTGTCA
GCAACCCTCCTTCTAGGAAGGGGGGGTAGGGGCAGAGTGTATGAAGACGT
CTTCATGGAAACATTAAGCAATTGTTTTAATAACTGGGTTTAGAAGCACT
GGGCCAGCAGTCCTAAAATGAGTAAGAGCTAGACCATGGCTGTCTCATGG
GGTGGAGGCTGGGCTAAGTACCTGGCAAATGTCCCTTGTGGTCATGGCCA
TGACACAGGAAGCATACGGTTCAGAAGTATGAGGTAGAAGAAACTTCCAG
GTACAGGGCCAGTGGTCTCACAAGCTCTCTAGTATTTCTGGCTATAATTT
TAAAGAAGGCTTGTAGTTGGACTGTCTGAAAGATGTGTAGACCAGGGCGG
AAAGCAGAAACCTGATCAGAGGCTTTTGGGTGCCCTGCTTTCTCATGGAG
TGACTGCCTCTGCTGCTGCCTTATGGAGTCTTTTAAAGTAGCTTTTCCTA
GTTTTGTGGGAAACTCGACTTGTGGTGTAAGAAGGGCTCCTATACACATA
GCTCCTCTTCCCTCTGTGAGGTGCCAGAGAGCACATTAGGAAAGAAACAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_j24.g1 MSMg01no054_j24.g1 CHROMAT_FILE:
MSMg01no054_j24.g1 PHD_FILE: MSMg01no054_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:51 2005
         (593 letters)



>mm_chr5_123886033_123887026
          Length = 994

 Score = 1093 bits (565), Expect = 0.0
 Identities = 587/595 (98%), Gaps = 3/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtttgctaactccatccaacaaaattgtaagaggggcctttgttgccctgtgaactt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 atggtttgctaactccatccaacaaaattgtaagaggggcctttgttgtcctgtgaactt 260

                                                                       
Query: 61  cctgttttgtgtcagcaaccctccttctaggaaggggggg--taggggcagagtgtatga 118
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 261 cctgttttgtgtcagcaaccctccttctaggaagggggggggtaggggcagagtgtatga 320

                                                                       
Query: 119 agacgtcttcatggaaacattaagcaattgttttaataactgggtttagaagcactgggc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 agacgtcttcatggaaacattaagcaattgttttaataactgggtttagaagcactggac 380

                                                                       
Query: 179 cagcagtcctaaaatgagtaagagctagaccatggctgtctcatggggtggaggctgggc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcagtcctaaaatgagtaagagctagaccatggctgtctcatggggtggaggctgggc 440

                                                                       
Query: 239 taagtacctggcaaatgtcccttgtggtcatggccatgacacaggaagcatacggttcag 298
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 taagtacctggcaaatgtcccttgtggtcatggccatgacacaggaagcacacggttcag 500

                                                                       
Query: 299 aagtatgaggtagaagaaacttccaggtacagggccagtggtctcacaagctctctagta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtatgaggtagaagaaacttccaggtacagggccagtggtctcacaagctctctagta 560

                                                                       
Query: 359 tttctggctataattttaaagaaggcttgtagttggactgtctgaaagatgtgtagacca 418
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctggctataattt-aaagaagccttgtagttggactgtctgaaagatgtgtagacca 619

                                                                       
Query: 419 gggcggaaagcagaaacctgatcagaggcttttgggtgccctgctttctcatggagtgac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggcggaaagcagaaacctgatcagaggcttttgggtgccctgctttctcatggagtgac 679

                                                                       
Query: 479 tgcctctgctgctgccttatggagtcttttaaagtagcttttcctagttttgtgggaaac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgcctctgctgctgccttatggagtcttttaaagtagcttttcctagttttgtgggaaac 739

                                                                  
Query: 539 tcgacttgtggtgtaagaagggctcctatacacatagctcctcttccctctgtga 593
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 740 tcgacttgtggtgtaagaagggctcctatacacatagcccctcttccctctgtga 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space:   573672
Effective search space used:   573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)