Query= MSMg01no054_l04.b1 MSMg01no054_l04.b1 CHROMAT_FILE:
MSMg01no054_l04.b1 PHD_FILE: MSMg01no054_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:56 2005
(358 letters)
>mm_chr5_72171254_72172010
Length = 757
Score = 623 bits (322), Expect = 0.0
Identities = 349/358 (97%), Gaps = 1/358 (0%)
Strand = Plus / Plus
Query: 1 aaagtgcttatttcttccagtttcaggagttgttacgccgtatgggcaggtctttatcat 60
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 201 aaagtgcttatttcttccagtctcaggagttgttacgcagtatgggcaggtctttatcat 260
Query: 61 gccagtgaatcagtgtgtccattcctgtgcccatgtgcatgttgcaaggatatctgcttg 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gccagtgaatcagtgtgcccattcctgtgcccatgtgcatgttgcaaggatatctgtttg 320
Query: 121 attgtgaatctgggcatgcaacaatagggattttatccaagtacgtgcttttccatttat 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 attgtgaatctgggcatgcaacaataggcattttatccaagtacgtgcttttccatttat 380
Query: 181 cttcatcatggaggcactataattgaatttctgcccagattcctggcatgtgacttctct 240
||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 cttcatcatggaggcac-agaattgaatttctgcccagattcccggcatgtgacttctct 439
Query: 241 ttttctattagtttgcgacatcagggacagattttctgttttcaaacagtcatgatattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttctattagtttgcgacatcagggacagattttctgttttcaaacagtcatgatattt 499
Query: 301 taataagactcctgagacacatttttttgattcccctccatgctgtcttcaagtttca 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 taataagactcctgagacacatttttttaattcccctccatgctgtcttcaagtttca 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space: 261052
Effective search space used: 261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_l04.g1 MSMg01no054_l04.g1 CHROMAT_FILE:
MSMg01no054_l04.g1 PHD_FILE: MSMg01no054_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:56 2005
(382 letters)
>mm_chr5_72335165_72335946
Length = 782
Score = 679 bits (351), Expect = 0.0
Identities = 373/383 (97%), Gaps = 7/383 (1%)
Strand = Plus / Minus
Query: 1 attccagatcctcctgtagaatcagctgaggatgctgtgccactgatccctcgattctat 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 517 attccagatcctcctgtagaatcagctgaggatgctgtgccactgatccat-gattctat 459
Query: 61 ttccttcttttcctagtgctatttaaaaag-aatcatatcttattaaatggcaacaagtg 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 458 ttccttcttttcctagtgctatttaaaaagaaatcatatcttattaaatggcaacaagtg 399
Query: 120 tcaagcacttgggaaagttttgcgagatatacatacatactccaaagggcaaataatgga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcaagcacttgggaaagttttgcgagatatacatacatactccaaagggcaaataatgga 339
Query: 180 tattagaagatacagggaacttcataattagtgaggtattaatgataaattagattgcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tattagaagatacagggaacttcataattagtgaggtattaatgataaattagattgcaa 279
Query: 240 tgcaaggacaccctttccagagttagaggattgtatcttgtatctcaagacaaaagagag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgcaaggacaccctttccagagttagaggattgtatcttgtatctcaagacaaaagagag 219
Query: 300 aaaatgcctggtaggctgtttttcgttttttttttttttgtttttcatttttttttcttt 359
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 218 aaaatgcctggtaggctgtttttcgttttttttgtttttcttttt-----ttttttcttt 164
Query: 360 ctggaggtagcacatttgatgca 382
|||||||||||||||||||||||
Sbjct: 163 ctggaggtagcacatttgatgca 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
