BAC Information

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BAC

Clone NameMSMg01-055B06
Chromosome5 (Build37)
Map Location 122,441,505 - 122,441,962
singlet/doubletsinglet
Overlap geneCutl2
Upstream geneRph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik
Downstream geneLOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055B06.T7 (MSMg01no055_b06.b1)MSMg01-055B06.TJ (MSMg01no055_b06.g1)
ACCAG282844AG282845
length760733
length of high quality
(start - end)
239 (47 - 285)458 (77 - 534)
definitionCHROMAT_FILE: MSMg01no055_b06.b1 PHD_FILE: MSMg01no055_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:24 2005CHROMAT_FILE: MSMg01no055_b06.g1 PHD_FILE: MSMg01no055_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGCATGCACCACTTCGCCAGGTTTACATGGTCCTGAGGGATC
GGGACTCAGCACCTTCTGCATACCAGCCAAGCACACTACTGAGCCACATC
CCCAGCTCTCTCCGCCACCTTTTTTTTTTTCTTTTCTTTCTTTTTTTCTT
TATTTTTCTTTTCTTTTTTTTTTTTTTTTTTGGTTTTTTGATTTTTCAAG
ACAGGGTTTCTCTGGGTAGCCCTGGCTGTCCTAGAACTTGTTCTGTAAAC
CATTATGGCCTCTAATTCTTAAATCTTCCTGCCTCATGATCCCAAGAGGT
GGGATTAAATGTTTTTGCCCCCCCCCCCCGCCCCTTTTTTTTTTTCAAAC
CGGTTTTCATCCACTTCTTGAAACTAAAACAATCGTTCCGCCCGTTGGAC
ATTTCTTCACTTACTCGCTGAGATACCATATATTATTAACCAACAATCAC
CCACTCCTTTTCTTCACCATCACACAACTTTAAACCATTATTTTAGAGTA
TTTAACCATTGTTACCATATGCATTTGTTATAAATTTTGCCCACTCATAC
TTTCCCCCGCAAGCTGTTGTATATTACTCTATAATTTTACTTTTACATTT
CATTACATTCGCACGCCCTTTATATTGATCAAACAACCTCTCTCATACTC
ACTCCTTGACTACACTCCTTCTATGTCATTCATTGAATACTCCCCACGAC
CTCACAACCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATGAAAACACAGAGGACATGAA
CTACGGGGAGAAGTCTTGAACCACAAGAGCAGAACTGGAGGATAGAAAGT
CACGCGCTATCCTCTGTGATGCTAAAGGGCACTCCCAGAAAGGTGGACGG
GCTGCTCTGTCGGAAGCAACAAACCACACATGGACACTCACTTTTTCTTG
GAATGGAGAAACAGAGGGAGGCACACGGGGTTGAAGCTGGGTGTCCAGGG
GCTGGTTCCGTGGCTAAGAGCACTGGCTGCTCCTGCAGAGGATTCGGACT
CAATCCCCAGCACCCACAGGGCAGCTCACAACCATCTGTAACTCTGCTTC
CAGGGGATCTAACACCCTTTCCAGCCTCTGCAGGCTCCAGGCACAGACAT
ACATGCAAGGCAAAACACATTTTTAAAATCTAAAAAGATCCTTAAGTTGG
AAGTCTACCTAAGAAATGATAAGAGTCCCCACACCATATACTCTACCTAA
CTCGAGGTGCACCATAGGCTTATACAGAAAAGAGGAGAAGGGTTTGAATA
CTAAGGGTTAACATACTACAATTGGCGGTAGTGTCGAAGGTCACAGTTTA
TGAAAACAAACCAGTTACTTACAGTGTGCGACCGTCCAGTCGCGCCCCCA
GGTCTGAGTCCTGACCCGGTATTCCCCCCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_b06.g1 MSMg01no055_b06.g1 CHROMAT_FILE:
MSMg01no055_b06.g1 PHD_FILE: MSMg01no055_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:24 2005
         (458 letters)



>mm_chr5_122441305_122442162
          Length = 858

 Score =  832 bits (430), Expect = 0.0
 Identities = 451/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgaaaacacagaggacatgaactacggggagaagtcttgaaccacaagagcagaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgaaaacacagaggacatgaactacggggagaagtcttgaaccacaagagcagaact 260

                                                                       
Query: 61  ggaggatagaaagtcacgcgctatcctctgtgatgctaaagggcactcccagaaaggtgg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ggaggatagaaagtcacgcgctatcctctgtgacgctaaagggcactcccagaaaggtgg 320

                                                                       
Query: 121 acgggctgctctgtcggaagcaacaaaccacacatggacactcactttttcttggaatgg 180
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 acaggctgctctgtcggaagcaacaaaccacacatggacactcacttttgcttggaatgg 380

                                                                       
Query: 181 agaaacagagggaggcacacggggttgaagctgggtgtccaggggctggttccgtggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaacagagggaggcacacggggttgaagctgggtgtccaggggctggttccgtggcta 440

                                                                       
Query: 241 agagcactggctgctcctgcagaggattcggactcaatccccagcacccacagggcagct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 agagcactggctgctcctgcagaggattcggactcaatccccagcacccacagggcagtt 500

                                                                       
Query: 301 cacaaccatctgtaactctgcttccaggggatctaacaccctttccagcctctgcaggct 360
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 cacaaccatgtgtaactctgcttccaggggatccaacaccctttccagcctctgcaggct 560

                                                                       
Query: 361 ccaggcacagacatacatgcaaggcaaaacacatttttaaaatctaaaaagatccttaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggcacagacatacatgcaaggcaaaacacatttttaaaatctaaaaagatccttaag 620

                                                 
Query: 421 ttggaagtctacctaagaaatgataagagtccccacac 458
           ||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 ttggaagtctacctaagaaatgacaagagtccccacac 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)